{"_id":"576bcb4074a8640e004cec79","__v":0,"parentDoc":null,"project":"55faf11ba62ba1170021a9a7","user":"566590c83889610d0008a253","version":{"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","__v":38,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77","59a555bccdbd85001bfb1442"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"category":{"_id":"576bc92afb62dd20001cda85","project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-06-23T11:34:02.608Z","from_sync":false,"order":22,"slug":"interactive-analysis","title":"INTERACTIVE ANALYSIS"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-23T11:42:56.347Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"settings":"","results":{"codes":[]},"auth":"required","params":[],"url":""},"isReference":false,"order":5,"body":"The Seven Bridges Coverage app has been developed to calculate the depth of exon coverage, given in a BED file with reads defined in a BAM file.  The app is built on the 'coverageBed' function. It provides a report in the form of an interactive built-in visualization page.  The Seven Bridges Coverage app summary report is available for all files with the **extension.summary**.\n\nClick any file with the extension.summary to access its Seven Bridges Coverage summary report.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/DbwGb4oQS32TnvaZutGd_coverage-app.png\",\n        \"coverage-app.png\",\n        \"1200\",\n        \"683\",\n        \"#596d78\",\n        \"\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\n  * The depth of coverage is shown on the x-axis, and target region bases on the y-axis\n  * The overall distribution of the target coverage is shown below the plot. To change the coverage threshold, use the top slider.\n  * To scale the y-axis, use the slider on the right side of the plot.\n  * The Birds-eye view is above the plot with the region currently viewed highlighted in red. To change the birds-eye view, drag the red view region along the x-axis.\n\n<div align=\"right\"><a href=\"#top\">top</a></div>","excerpt":"<a name=\"top\"></a>","slug":"the-seven-bridges-coverage-app","type":"basic","title":"The Seven Bridges Coverage app"}

The Seven Bridges Coverage app

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The Seven Bridges Coverage app has been developed to calculate the depth of exon coverage, given in a BED file with reads defined in a BAM file. The app is built on the 'coverageBed' function. It provides a report in the form of an interactive built-in visualization page. The Seven Bridges Coverage app summary report is available for all files with the **extension.summary**. Click any file with the extension.summary to access its Seven Bridges Coverage summary report. [block:image] { "images": [ { "image": [ "https://files.readme.io/DbwGb4oQS32TnvaZutGd_coverage-app.png", "coverage-app.png", "1200", "683", "#596d78", "" ], "border": true } ] } [/block] * The depth of coverage is shown on the x-axis, and target region bases on the y-axis * The overall distribution of the target coverage is shown below the plot. To change the coverage threshold, use the top slider. * To scale the y-axis, use the slider on the right side of the plot. * The Birds-eye view is above the plot with the region currently viewed highlighted in red. To change the birds-eye view, drag the red view region along the x-axis. <div align="right"><a href="#top">top</a></div>