{"_id":"586d3da9cd6e243900cfdd61","version":{"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","__v":40,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77","59a555bccdbd85001bfb1442","5a2a81f688574d001e9934f5","5b080c8d7833b20003ddbb6f"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"parentDoc":null,"project":"55faf11ba62ba1170021a9a7","__v":0,"user":"575e85ac41c8ba0e00259a44","category":{"_id":"586d3c287c6b5b2300c05055","version":"55faf11ba62ba1170021a9aa","__v":0,"project":"55faf11ba62ba1170021a9a7","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2017-01-04T18:17:12.683Z","from_sync":false,"order":21,"slug":"task-execution","title":"TASK EXECUTION"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2017-01-04T18:23:37.290Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":9,"body":"[block:parameters]\n{\n  \"data\": {\n    \"h-0\": \"Hint name\",\n    \"h-1\": \"Workflow level\",\n    \"h-2\": \"Node level\",\n    \"h-3\": \"Tool level\",\n    \"h-4\": \"Default\",\n    \"h-5\": \"Notes\",\n    \"h-6\": \"See also\",\n    \"0-0\": \"`sbg:CPURequirement`<sup>1</sup>\\nAllocates this many CPU cores for the execution of the tool.\",\n    \"1-2\": \":no-entry-sign:\",\n    \"0-3\": \":white-check-mark:\",\n    \"2-4\": \"Decided by the scheduling algorithm\",\n    \"2-5\": \":warning: The task will fail if the resources available on the instance are insufficient for any tool in the workflow.\",\n    \"0-2\": \":no-entry-sign:\",\n    \"0-1\": \":no-entry-sign:\",\n    \"0-4\": \"1\",\n    \"0-5\": \"Accepts dynamic expressions\",\n    \"0-6\": \"[Tool resource requirements](doc:about-tool-resource-requirements)\",\n    \"1-1\": \":no-entry-sign:\",\n    \"1-3\": \":white-check-mark:\",\n    \"2-1\": \":white-check-mark:\",\n    \"2-2\": \":white-check-mark:\",\n    \"2-3\": \":white-check-mark:\",\n    \"3-1\": \":white-check-mark:\",\n    \"4-3\": \":white-check-mark:\",\n    \"3-2\": \":no-entry-sign:\",\n    \"3-3\": \":no-entry-sign:\",\n    \"4-1\": \":no-entry-sign:\",\n    \"4-2\": \":no-entry-sign:\",\n    \"3-5\": \":warning:  If a step is an inner workflow, its `sbg:maxNumberOfParallelInstances` will be overridden with the value from the outer workflow, even if it has not been set explicitly (*i.e.* the default value takes precedence).\",\n    \"1-5\": \"Accepts dynamic expressions\",\n    \"1-4\": \"1024 [MB]\",\n    \"3-4\": \"1\",\n    \"4-4\": \"file name\",\n    \"1-0\": \"`sbg:MemRequirement`<sup>1</sup>\\nAllocates this much MB of RAM for the execution of the tool.\",\n    \"2-0\": \"`sbg:AWSInstanceType`\\nConfigures the type of all the AWS instances provisioned for this workflow/node/tool.\\nPriority: \\n*workflow > node > tool*\",\n    \"3-0\": \"`sbg:maxNumberOfParallelInstances`\\nSets the maximum number of instances that can run in parallel for workflow execution.\",\n    \"4-0\": \"`sbg:SaveLogs`\\nConfigures the additional files to preserve as logs inside the project\",\n    \"1-6\": \"[Tool resource requirements](doc:about-tool-resource-requirements)\",\n    \"2-6\": \"[Available AWS instances](doc:list-of-available-amazon-web-services-instances)\"\n  },\n  \"cols\": 7,\n  \"rows\": 5\n}\n[/block]\n<sup>1</sup> The hints prefixed with **sbg:** are specific for the Seven Bridges execution environment. CWL 1.0 introduces **coresMin** / **coresMax** (minimum and maximum number of CPU cores) and **ramMin** / **ramMax** (minimum and maximum amount of RAM) in [resource requirements](http://www.commonwl.org/v1.0/CommandLineTool.html#ResourceRequirement), which can be found on any level (**Workflow**, **Step**, **Tool**). If your CWL 1.0 app description contains only the **-Min** or the **-Max** value, the Seven Bridges execution environment will use the specified value as the number of cores or amount of RAM required for execution. If both the **-Min** and the **-Max** value are specified, the execution will ignore the **-Max** value and provide enough resources to accommodate the **-Min** requirement, in order to provide consistency in execution of apps described using either sbg:draft-2 or 1.0 version of CWL. Finally, if **sbg:CPURequirement** or **sbg:MemRequirement** are evaluated along with the corresponding CWL 1.0 **-Min** requirements (**coresMin** or **ramMin**), the execution will use the higher of these two values as the required number of cores or amount of RAM.\n\nDisk space requirements introduced in CWL 1.0 (**tmpdirMin** / **tmpdirMax** and **outdirMin** / **outdirMax**) are unfortunately not currently supported by the CGC.","excerpt":"","slug":"list-of-execution-hints","type":"basic","title":"List of execution hints"}

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List of execution hints

[block:parameters] { "data": { "h-0": "Hint name", "h-1": "Workflow level", "h-2": "Node level", "h-3": "Tool level", "h-4": "Default", "h-5": "Notes", "h-6": "See also", "0-0": "`sbg:CPURequirement`<sup>1</sup>\nAllocates this many CPU cores for the execution of the tool.", "1-2": ":no-entry-sign:", "0-3": ":white-check-mark:", "2-4": "Decided by the scheduling algorithm", "2-5": ":warning: The task will fail if the resources available on the instance are insufficient for any tool in the workflow.", "0-2": ":no-entry-sign:", "0-1": ":no-entry-sign:", "0-4": "1", "0-5": "Accepts dynamic expressions", "0-6": "[Tool resource requirements](doc:about-tool-resource-requirements)", "1-1": ":no-entry-sign:", "1-3": ":white-check-mark:", "2-1": ":white-check-mark:", "2-2": ":white-check-mark:", "2-3": ":white-check-mark:", "3-1": ":white-check-mark:", "4-3": ":white-check-mark:", "3-2": ":no-entry-sign:", "3-3": ":no-entry-sign:", "4-1": ":no-entry-sign:", "4-2": ":no-entry-sign:", "3-5": ":warning: If a step is an inner workflow, its `sbg:maxNumberOfParallelInstances` will be overridden with the value from the outer workflow, even if it has not been set explicitly (*i.e.* the default value takes precedence).", "1-5": "Accepts dynamic expressions", "1-4": "1024 [MB]", "3-4": "1", "4-4": "file name", "1-0": "`sbg:MemRequirement`<sup>1</sup>\nAllocates this much MB of RAM for the execution of the tool.", "2-0": "`sbg:AWSInstanceType`\nConfigures the type of all the AWS instances provisioned for this workflow/node/tool.\nPriority: \n*workflow > node > tool*", "3-0": "`sbg:maxNumberOfParallelInstances`\nSets the maximum number of instances that can run in parallel for workflow execution.", "4-0": "`sbg:SaveLogs`\nConfigures the additional files to preserve as logs inside the project", "1-6": "[Tool resource requirements](doc:about-tool-resource-requirements)", "2-6": "[Available AWS instances](doc:list-of-available-amazon-web-services-instances)" }, "cols": 7, "rows": 5 } [/block] <sup>1</sup> The hints prefixed with **sbg:** are specific for the Seven Bridges execution environment. CWL 1.0 introduces **coresMin** / **coresMax** (minimum and maximum number of CPU cores) and **ramMin** / **ramMax** (minimum and maximum amount of RAM) in [resource requirements](http://www.commonwl.org/v1.0/CommandLineTool.html#ResourceRequirement), which can be found on any level (**Workflow**, **Step**, **Tool**). If your CWL 1.0 app description contains only the **-Min** or the **-Max** value, the Seven Bridges execution environment will use the specified value as the number of cores or amount of RAM required for execution. If both the **-Min** and the **-Max** value are specified, the execution will ignore the **-Max** value and provide enough resources to accommodate the **-Min** requirement, in order to provide consistency in execution of apps described using either sbg:draft-2 or 1.0 version of CWL. Finally, if **sbg:CPURequirement** or **sbg:MemRequirement** are evaluated along with the corresponding CWL 1.0 **-Min** requirements (**coresMin** or **ramMin**), the execution will use the higher of these two values as the required number of cores or amount of RAM. Disk space requirements introduced in CWL 1.0 (**tmpdirMin** / **tmpdirMax** and **outdirMin** / **outdirMax**) are unfortunately not currently supported by the CGC.