{"_id":"584592b09f79b51900b0768d","__v":3,"category":{"_id":"58458b4fba4f1c0f009692bb","project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-12-05T15:44:15.650Z","from_sync":false,"order":6,"slug":"datasets-hub","title":"DATASETS HUB"},"githubsync":"","project":"55faf11ba62ba1170021a9a7","user":"5613e4f8fdd08f2b00437620","version":{"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","__v":40,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77","59a555bccdbd85001bfb1442","5a2a81f688574d001e9934f5","5b080c8d7833b20003ddbb6f"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"parentDoc":null,"updates":["5a8c40bdd2a7c7004b5e607f","5a94349695b180004898ee49","5b131d57bc90f5000319ed99"],"next":{"pages":[],"description":""},"createdAt":"2016-12-05T16:15:44.621Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":29,"body":"[block:callout]\n{\n  \"type\": \"info\",\n  \"body\": \"Seven Bridges is committed to providing CGC users with the most up-to-date versions of the public datasets that are available from the [NCI Genomic Data Commons](https://gdc.cancer.gov/) (GDC). In keeping with this commitment, the CGC transitioned to hosting the GDC Data Release 11.0 versions of TCGA GRCh38, TARGET GRCh38, TCGA legacy, and CCLE on July 10, 2018. As of this date, all files accessible via the Data Browser correspond to Data Release 11.0. Files from earlier dataset versions that are no longer represented in Data Release 11.0 are no longer accessible through saved Data Browser queries, and affected queries will return a result of '0'. In addition, due to a change in the way some files within these datasets are hosted, a small number of saved Data Browser queries for which the files are still available also will return a '0' result. Such queries can be recreated using the Data Browser query-building canvas and will continue to return the same results as previously. Please contact the CGC Team at [cgc:::at:::sbgenomics.com](mailto:cgc@sbgenomics.com) if you have any questions. The CGC Team looks forward to continuing to collaborate with the GDC in the months ahead to ensure the timely availability through the CGC of new data releases for this dataset.\"\n}\n[/block]\n\n[block:callout]\n{\n  \"type\": \"warning\",\n  \"title\": \"On this page:\",\n  \"body\": \"* [Overview](#section-overview)\\n* [Access the Data Browser](#section-access-the-data-browser)\\n  * [Method 1: Access the Data Browser from the top navigation bar](#section-method-1-access-the-data-browser-from-the-top-navigation)\\n  * [Method 2: Access the Data Browser from the Case Explorer](#section-method-2-access-the-data-browser-from-the-case-explorer)\\n* [Resources](#section-resources)\"\n}\n[/block]\n##Overview\nThe Data Browser is an interactive graphical interface for visually exploring datasets. Build queries to filter data by its metadata attributes. Then, add the filtered data to a CGC project for further analysis.\n\nUse the Data Browser to query [TCGA](doc:tcga-data), [TCGA GRCh38](doc:tcga-grch38-data), [TARGET GRCh38 data](doc:target-data), [ICGC](doc:icgc-data), [CPTAC](doc:cptac-data), [TCIA](doc:tcia-data), and [CCLE](doc:ccle-data).\n\n<div align=\"right\"><a href=\"#top\">top</a></div>\n\n##Access the Data Browser\n\nAccess the Data Browser in one of two ways:\n* Method 1: [From the top navigation bar](#section-method-1-access-the-data-browser-from-the-top-navigation-bar)\n* Method 2: [From the Case Explorer](#section-method-2-access-the-data-browser-from-the-case-explorer)\n\n<div align=\"right\"><a href=\"#top\">top</a></div>\n\n###Method 1: Access the Data Browser from the top navigation bar\n\n1. Click **Data** on the top navigation bar.\n2. Select **Data Browser**.\n\n<div align=\"right\"><a href=\"#top\">top</a></div>\n\n###Method 2: Access the Data Browser from the Case Explorer\n\nNote that this method currently only works for the TCGA GRCh38 dataset.\n\n1. Select your cases from the TCGA GRCh38 dataset using the Case Explorer.\n2. Use them to begin a query in the Data Browser by clicking **Continue to Data Browser**.\n\n<div align=\"right\"><a href=\"#top\">top</a></div>\n\n##Resources\n\n* [Data Browser features](doc:data-browser-features)\n* [Data Browser query structure](doc:data-browser-query-structure)\n* [Data Browser query: start from an example query](doc:data-browser-query-start-from-an-example-query)\n* [Data Browser query: start by searching through a dataset](doc:data-browser-query-start-by-searching-through-a-dataset)\n* [Data Browser query: start from scratch](doc:data-browser-query-start-from-scratch)\n* [Data Browser query: start from an existing query](doc:data-browser-query-start-from-an-existing-query)\n* [Data Browser query: multiple dataset query](doc:data-browser-query-multiple-dataset-query)\n* [About metadata for datasets](doc:about-metadata-for-datasets)\n\n\n\n\n<div align=\"right\"><a href=\"#top\">top</a></div>","excerpt":"<a href=\"query-datasets\" style=\"color:#132c56\">QUERY DATASETS</a> > About the Data Browser","slug":"about-the-data-browser","type":"basic","title":"About the Data Browser"}

About the Data Browser

<a href="query-datasets" style="color:#132c56">QUERY DATASETS</a> > About the Data Browser

[block:callout] { "type": "info", "body": "Seven Bridges is committed to providing CGC users with the most up-to-date versions of the public datasets that are available from the [NCI Genomic Data Commons](https://gdc.cancer.gov/) (GDC). In keeping with this commitment, the CGC transitioned to hosting the GDC Data Release 11.0 versions of TCGA GRCh38, TARGET GRCh38, TCGA legacy, and CCLE on July 10, 2018. As of this date, all files accessible via the Data Browser correspond to Data Release 11.0. Files from earlier dataset versions that are no longer represented in Data Release 11.0 are no longer accessible through saved Data Browser queries, and affected queries will return a result of '0'. In addition, due to a change in the way some files within these datasets are hosted, a small number of saved Data Browser queries for which the files are still available also will return a '0' result. Such queries can be recreated using the Data Browser query-building canvas and will continue to return the same results as previously. Please contact the CGC Team at [cgc@sbgenomics.com](mailto:cgc@sbgenomics.com) if you have any questions. The CGC Team looks forward to continuing to collaborate with the GDC in the months ahead to ensure the timely availability through the CGC of new data releases for this dataset." } [/block] [block:callout] { "type": "warning", "title": "On this page:", "body": "* [Overview](#section-overview)\n* [Access the Data Browser](#section-access-the-data-browser)\n * [Method 1: Access the Data Browser from the top navigation bar](#section-method-1-access-the-data-browser-from-the-top-navigation)\n * [Method 2: Access the Data Browser from the Case Explorer](#section-method-2-access-the-data-browser-from-the-case-explorer)\n* [Resources](#section-resources)" } [/block] ##Overview The Data Browser is an interactive graphical interface for visually exploring datasets. Build queries to filter data by its metadata attributes. Then, add the filtered data to a CGC project for further analysis. Use the Data Browser to query [TCGA](doc:tcga-data), [TCGA GRCh38](doc:tcga-grch38-data), [TARGET GRCh38 data](doc:target-data), [ICGC](doc:icgc-data), [CPTAC](doc:cptac-data), [TCIA](doc:tcia-data), and [CCLE](doc:ccle-data). <div align="right"><a href="#top">top</a></div> ##Access the Data Browser Access the Data Browser in one of two ways: * Method 1: [From the top navigation bar](#section-method-1-access-the-data-browser-from-the-top-navigation-bar) * Method 2: [From the Case Explorer](#section-method-2-access-the-data-browser-from-the-case-explorer) <div align="right"><a href="#top">top</a></div> ###Method 1: Access the Data Browser from the top navigation bar 1. Click **Data** on the top navigation bar. 2. Select **Data Browser**. <div align="right"><a href="#top">top</a></div> ###Method 2: Access the Data Browser from the Case Explorer Note that this method currently only works for the TCGA GRCh38 dataset. 1. Select your cases from the TCGA GRCh38 dataset using the Case Explorer. 2. Use them to begin a query in the Data Browser by clicking **Continue to Data Browser**. <div align="right"><a href="#top">top</a></div> ##Resources * [Data Browser features](doc:data-browser-features) * [Data Browser query structure](doc:data-browser-query-structure) * [Data Browser query: start from an example query](doc:data-browser-query-start-from-an-example-query) * [Data Browser query: start by searching through a dataset](doc:data-browser-query-start-by-searching-through-a-dataset) * [Data Browser query: start from scratch](doc:data-browser-query-start-from-scratch) * [Data Browser query: start from an existing query](doc:data-browser-query-start-from-an-existing-query) * [Data Browser query: multiple dataset query](doc:data-browser-query-multiple-dataset-query) * [About metadata for datasets](doc:about-metadata-for-datasets) <div align="right"><a href="#top">top</a></div>