{"metadata":{"image":[],"title":"","description":""},"api":{"url":"","auth":"required","results":{"codes":[]},"settings":"","params":[]},"next":{"description":"","pages":[]},"title":"PGP-UK metadata","type":"basic","slug":"pgp-uk-metadata","excerpt":"","body":"Metadata is data that describes other data. On this page, we've detailed the metadata that are available for filtering Personal Genome Project UK (PGP-UK) pilot data in the associated [public project](https://cgc.sbgenomics.com/u/sevenbridges/personal-genome-project-uk-pgp-uk/) on the CGC. The PGP-UK pilot dataset contains 201 files from 13 individuals, as downloaded from the [PGP-UK Data Portal](https://www.personalgenomes.org.uk/data/) on 18 March 2018.\n\n[Filter the data by metadata fields](doc:search-files-on-the-cgc#section-filter-by-metadata-fields) to find the PGP-UK data you’re interested in. Alternatively, you can [sort the available files by metadata fields](doc:search-files-on-the-cgc#section-sort-by-metadata-fields) or filter via [tags](doc:tag-your-files#section-filtering-tags-within-a-project) that we’ve added to the files.\n\n### FILTER BY METADATA FIELDS\nThe following metadata fields can be used to search for samples of interest:\n[block:parameters]\n{\n  \"data\": {\n    \"h-0\": \"Information Category\",\n    \"h-1\": \"Metadata Field(s)\",\n    \"0-0\": \"File Type\",\n    \"0-1\": \"Type\",\n    \"1-0\": \"Assay\",\n    \"1-1\": \"Experimental Strategy\",\n    \"2-0\": \"Assay\",\n    \"2-1\": \"Platform\",\n    \"3-0\": \"Sample\",\n    \"3-1\": \"Case ID\",\n    \"4-0\": \"Sample\",\n    \"4-1\": \"Sample Type\",\n    \"5-0\": \"Phenotypic Information\",\n    \"5-1\": \"Current Smoker?\",\n    \"6-0\": \"Phenotypic Information\",\n    \"6-1\": \"Ex-Smoker?\",\n    \"7-0\": \"Phenotypic Information\",\n    \"7-1\": \"Handedness\",\n    \"8-0\": \"Phenotypic Information\",\n    \"8-1\": \"Height\",\n    \"9-0\": \"Phenotypic Information\",\n    \"9-1\": \"Hair Colour\",\n    \"10-0\": \"Phenotypic Information\",\n    \"10-1\": \"Left Eye Colour\",\n    \"11-0\": \"Phenotypic Information\",\n    \"11-1\": \"Right Eye Colour\",\n    \"12-0\": \"Phenotypic Information\",\n    \"12-1\": \"Weight\",\n    \"13-0\": \"Phenotypic Information\",\n    \"13-1\": \"Blood Type\",\n    \"14-0\": \"Phenotypic Information\",\n    \"14-1\": \"Age at Sample Collection\",\n    \"15-0\": \"Phenotypic Information\",\n    \"15-1\": \"Date of Birth\",\n    \"16-0\": \"Phenotypic Information\",\n    \"16-1\": \"Sex\",\n    \"17-0\": \"Phenotypic Information\",\n    \"17-1\": \"Survey taken on\",\n    \"18-0\": \"Predicted Phenotype*\",\n    \"18-1\": \"Gender\",\n    \"19-0\": \"Predicted Phenotype*\",\n    \"19-1\": \"Age [years]\",\n    \"20-0\": \"Predicted Phenotype*\",\n    \"20-1\": \"Smoking Status\",\n    \"21-0\": \"Property (Methylation Array)\",\n    \"21-1\": \"Label\"\n  },\n  \"cols\": 2,\n  \"rows\": 22\n}\n[/block]\n\\* Some of the phenotypic features of PGP-UK participants were predicted by University College London using variant and methylation information. More details can be found in the [preprint](https://www.biorxiv.org/content/early/2018/03/27/288829).","updates":[],"order":22,"isReference":false,"hidden":false,"sync_unique":"","link_url":"","link_external":false,"_id":"5b3642bcbb84cb0003b1d52d","project":"55faf11ba62ba1170021a9a7","version":{"version":"1.0","version_clean":"1.0.0","codename":"","is_stable":true,"is_beta":true,"is_hidden":false,"is_deprecated":false,"categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77","59a555bccdbd85001bfb1442","5a2a81f688574d001e9934f5","5b080c8d7833b20003ddbb6f","5c222bed4bc358002f21459a","5c22412594a2a5005cc9e919","5c41ae1c33592700190a291e","5c8a525e2ba7b2003f9b153c","5cbf14d58c79c700ef2b502e","5db6f03a6e187c006f667fa4","5f894c7d3b0894006477ca01"],"_id":"55faf11ba62ba1170021a9aa","releaseDate":"2015-09-17T16:58:03.490Z","createdAt":"2015-09-17T16:58:03.490Z","project":"55faf11ba62ba1170021a9a7","__v":47},"category":{"sync":{"isSync":false,"url":""},"pages":[],"title":"DATASETS HUB","slug":"datasets-hub","order":6,"from_sync":false,"reference":false,"_id":"58458b4fba4f1c0f009692bb","createdAt":"2016-12-05T15:44:15.650Z","project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","__v":0},"user":"5767bc73bb15f40e00a28777","createdAt":"2018-06-29T14:31:24.800Z","githubsync":"","__v":0,"parentDoc":null}

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PGP-UK metadata

Metadata is data that describes other data. On this page, we've detailed the metadata that are available for filtering Personal Genome Project UK (PGP-UK) pilot data in the associated [public project](https://cgc.sbgenomics.com/u/sevenbridges/personal-genome-project-uk-pgp-uk/) on the CGC. The PGP-UK pilot dataset contains 201 files from 13 individuals, as downloaded from the [PGP-UK Data Portal](https://www.personalgenomes.org.uk/data/) on 18 March 2018. [Filter the data by metadata fields](doc:search-files-on-the-cgc#section-filter-by-metadata-fields) to find the PGP-UK data you’re interested in. Alternatively, you can [sort the available files by metadata fields](doc:search-files-on-the-cgc#section-sort-by-metadata-fields) or filter via [tags](doc:tag-your-files#section-filtering-tags-within-a-project) that we’ve added to the files. ### FILTER BY METADATA FIELDS The following metadata fields can be used to search for samples of interest: [block:parameters] { "data": { "h-0": "Information Category", "h-1": "Metadata Field(s)", "0-0": "File Type", "0-1": "Type", "1-0": "Assay", "1-1": "Experimental Strategy", "2-0": "Assay", "2-1": "Platform", "3-0": "Sample", "3-1": "Case ID", "4-0": "Sample", "4-1": "Sample Type", "5-0": "Phenotypic Information", "5-1": "Current Smoker?", "6-0": "Phenotypic Information", "6-1": "Ex-Smoker?", "7-0": "Phenotypic Information", "7-1": "Handedness", "8-0": "Phenotypic Information", "8-1": "Height", "9-0": "Phenotypic Information", "9-1": "Hair Colour", "10-0": "Phenotypic Information", "10-1": "Left Eye Colour", "11-0": "Phenotypic Information", "11-1": "Right Eye Colour", "12-0": "Phenotypic Information", "12-1": "Weight", "13-0": "Phenotypic Information", "13-1": "Blood Type", "14-0": "Phenotypic Information", "14-1": "Age at Sample Collection", "15-0": "Phenotypic Information", "15-1": "Date of Birth", "16-0": "Phenotypic Information", "16-1": "Sex", "17-0": "Phenotypic Information", "17-1": "Survey taken on", "18-0": "Predicted Phenotype*", "18-1": "Gender", "19-0": "Predicted Phenotype*", "19-1": "Age [years]", "20-0": "Predicted Phenotype*", "20-1": "Smoking Status", "21-0": "Property (Methylation Array)", "21-1": "Label" }, "cols": 2, "rows": 22 } [/block] \* Some of the phenotypic features of PGP-UK participants were predicted by University College London using variant and methylation information. More details can be found in the [preprint](https://www.biorxiv.org/content/early/2018/03/27/288829).