{"metadata":{"image":[],"title":"","description":""},"api":{"url":"","auth":"required","results":{"codes":[]},"settings":"","params":[]},"next":{"description":"","pages":[]},"title":"PGP-UK metadata","type":"basic","slug":"pgp-uk-metadata","excerpt":"","body":"Metadata is data that describes other data. On this page, we've detailed the metadata that are available for filtering Personal Genome Project UK (PGP-UK) pilot data in the associated [public project](https://cgc.sbgenomics.com/u/sevenbridges/personal-genome-project-uk-pgp-uk/) on the CGC. The PGP-UK pilot dataset contains 201 files from 13 individuals, as downloaded from the [PGP-UK Data Portal](https://www.personalgenomes.org.uk/data/) on 18 March 2018.\n\n[Filter the data by metadata fields](doc:search-files-on-the-cgc#section-filter-by-metadata-fields) to find the PGP-UK data you’re interested in. Alternatively, you can [sort the available files by metadata fields](doc:search-files-on-the-cgc#section-sort-by-metadata-fields) or filter via [tags](doc:tag-your-files#section-filtering-tags-within-a-project) that we’ve added to the files.\n\n### FILTER BY METADATA FIELDS\nThe following metadata fields can be used to search for samples of interest:\n[block:parameters]\n{\n  \"data\": {\n    \"h-0\": \"Information Category\",\n    \"h-1\": \"Metadata Field(s)\",\n    \"0-0\": \"File Type\",\n    \"0-1\": \"Type\",\n    \"1-0\": \"Assay\",\n    \"1-1\": \"Experimental Strategy\",\n    \"2-0\": \"Assay\",\n    \"2-1\": \"Platform\",\n    \"3-0\": \"Sample\",\n    \"3-1\": \"Case ID\",\n    \"4-0\": \"Sample\",\n    \"4-1\": \"Sample Type\",\n    \"5-0\": \"Phenotypic Information\",\n    \"5-1\": \"Current Smoker?\",\n    \"6-0\": \"Phenotypic Information\",\n    \"6-1\": \"Ex-Smoker?\",\n    \"7-0\": \"Phenotypic Information\",\n    \"7-1\": \"Handedness\",\n    \"8-0\": \"Phenotypic Information\",\n    \"8-1\": \"Height\",\n    \"9-0\": \"Phenotypic Information\",\n    \"9-1\": \"Hair Colour\",\n    \"10-0\": \"Phenotypic Information\",\n    \"10-1\": \"Left Eye Colour\",\n    \"11-0\": \"Phenotypic Information\",\n    \"11-1\": \"Right Eye Colour\",\n    \"12-0\": \"Phenotypic Information\",\n    \"12-1\": \"Weight\",\n    \"13-0\": \"Phenotypic Information\",\n    \"13-1\": \"Blood Type\",\n    \"14-0\": \"Phenotypic Information\",\n    \"14-1\": \"Age at Sample Collection\",\n    \"15-0\": \"Phenotypic Information\",\n    \"15-1\": \"Date of Birth\",\n    \"16-0\": \"Phenotypic Information\",\n    \"16-1\": \"Sex\",\n    \"17-0\": \"Phenotypic Information\",\n    \"17-1\": \"Survey taken on\",\n    \"18-0\": \"Predicted Phenotype*\",\n    \"18-1\": \"Gender\",\n    \"19-0\": \"Predicted Phenotype*\",\n    \"19-1\": \"Age [years]\",\n    \"20-0\": \"Predicted Phenotype*\",\n    \"20-1\": \"Smoking Status\",\n    \"21-0\": \"Property (Methylation Array)\",\n    \"21-1\": \"Label\"\n  },\n  \"cols\": 2,\n  \"rows\": 22\n}\n[/block]\n\\* Some of the phenotypic features of PGP-UK participants were predicted by University College London using variant and methylation information. More details can be found in the [preprint](https://www.biorxiv.org/content/early/2018/03/27/288829).","updates":[],"order":21,"isReference":false,"hidden":false,"sync_unique":"","link_url":"","link_external":false,"_id":"5b3642bcbb84cb0003b1d52d","project":"55faf11ba62ba1170021a9a7","version":{"version":"1.0","version_clean":"1.0.0","codename":"","is_stable":true,"is_beta":true,"is_hidden":false,"is_deprecated":false,"categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77","59a555bccdbd85001bfb1442","5a2a81f688574d001e9934f5","5b080c8d7833b20003ddbb6f","5c222bed4bc358002f21459a","5c22412594a2a5005cc9e919","5c41ae1c33592700190a291e","5c8a525e2ba7b2003f9b153c","5cbf14d58c79c700ef2b502e","5db6f03a6e187c006f667fa4"],"_id":"55faf11ba62ba1170021a9aa","releaseDate":"2015-09-17T16:58:03.490Z","createdAt":"2015-09-17T16:58:03.490Z","project":"55faf11ba62ba1170021a9a7","__v":46},"category":{"sync":{"isSync":false,"url":""},"pages":[],"title":"DATASETS HUB","slug":"datasets-hub","order":6,"from_sync":false,"reference":false,"_id":"58458b4fba4f1c0f009692bb","createdAt":"2016-12-05T15:44:15.650Z","project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","__v":0},"user":"5767bc73bb15f40e00a28777","createdAt":"2018-06-29T14:31:24.800Z","githubsync":"","__v":0,"parentDoc":null}

GET STARTED

TUTORIALS

ACCESS THE CGC

MANAGE AN ANALYSIS ENVIRONMENT

COLLABORATE SECURELY

DATASETS HUB

PUBLIC PROJECTS

BRING DATA TO THE CGC

SET METADATA ASSOCIATED WITH A PRIVATE FILE

SEARCH FILES

ADD FILES TO A PROJECT

ORGANIZE FILES

ARCHIVE FILES

FIND APPS

BRING YOUR TOOLS

DOCKER

DESCRIBE YOUR TOOL (LEGACY)

TOOL WRAPPING TIPS AND TRICKS

EDIT AN APP (LEGACY)

ARCHIVE APPS

RUN AN ANALYSIS

TASK EXECUTION

REVIEW A TASK

VIEW ANALYSIS RESULTS

INTERACTIVE ANALYSIS

DOWNLOAD RESULTS

DEVELOPER TOOLS

CONNECT CLOUD STORAGE

API Hub

API CLIENTS

SB Command Line Interface

API Reference

EDIT AN APP

BULK API ACTIONS

ASYNC BULK ACTIONS

DRS API

WATCH AND LEARN

DATA CRUNCHER

SBFS (Beta)

SBFS Command Reference

PGP-UK metadata

Metadata is data that describes other data. On this page, we've detailed the metadata that are available for filtering Personal Genome Project UK (PGP-UK) pilot data in the associated [public project](https://cgc.sbgenomics.com/u/sevenbridges/personal-genome-project-uk-pgp-uk/) on the CGC. The PGP-UK pilot dataset contains 201 files from 13 individuals, as downloaded from the [PGP-UK Data Portal](https://www.personalgenomes.org.uk/data/) on 18 March 2018. [Filter the data by metadata fields](doc:search-files-on-the-cgc#section-filter-by-metadata-fields) to find the PGP-UK data you’re interested in. Alternatively, you can [sort the available files by metadata fields](doc:search-files-on-the-cgc#section-sort-by-metadata-fields) or filter via [tags](doc:tag-your-files#section-filtering-tags-within-a-project) that we’ve added to the files. ### FILTER BY METADATA FIELDS The following metadata fields can be used to search for samples of interest: [block:parameters] { "data": { "h-0": "Information Category", "h-1": "Metadata Field(s)", "0-0": "File Type", "0-1": "Type", "1-0": "Assay", "1-1": "Experimental Strategy", "2-0": "Assay", "2-1": "Platform", "3-0": "Sample", "3-1": "Case ID", "4-0": "Sample", "4-1": "Sample Type", "5-0": "Phenotypic Information", "5-1": "Current Smoker?", "6-0": "Phenotypic Information", "6-1": "Ex-Smoker?", "7-0": "Phenotypic Information", "7-1": "Handedness", "8-0": "Phenotypic Information", "8-1": "Height", "9-0": "Phenotypic Information", "9-1": "Hair Colour", "10-0": "Phenotypic Information", "10-1": "Left Eye Colour", "11-0": "Phenotypic Information", "11-1": "Right Eye Colour", "12-0": "Phenotypic Information", "12-1": "Weight", "13-0": "Phenotypic Information", "13-1": "Blood Type", "14-0": "Phenotypic Information", "14-1": "Age at Sample Collection", "15-0": "Phenotypic Information", "15-1": "Date of Birth", "16-0": "Phenotypic Information", "16-1": "Sex", "17-0": "Phenotypic Information", "17-1": "Survey taken on", "18-0": "Predicted Phenotype*", "18-1": "Gender", "19-0": "Predicted Phenotype*", "19-1": "Age [years]", "20-0": "Predicted Phenotype*", "20-1": "Smoking Status", "21-0": "Property (Methylation Array)", "21-1": "Label" }, "cols": 2, "rows": 22 } [/block] \* Some of the phenotypic features of PGP-UK participants were predicted by University College London using variant and methylation information. More details can be found in the [preprint](https://www.biorxiv.org/content/early/2018/03/27/288829).