CummeRbundQC RNA-Seq Visualization

CummeRbundQC gives a way of assessing the quality of differential expression analysis performed with Cuffdiff. It takes a cuffdiff.zip folder as input and produces a report that can be viewed on the Seven Bridges Platform or downloaded to your local drive. The report is also rendered in a page that can be viewed directly from outside the Platform in any internet browser. Files that can be visualized with CummeRbundQC have the special extension cuffdiffcummerbund_report.b64html.

Click any file with the extension cuffdiffcummerbund_report.b64html to access the CummeRbundQC report.

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The left sidebar shows the contents of the CummeRbundQC report. To fully understand the report and plots, we recommend that you read the tutorial for this package.