ICGC-TCGA DREAM Somatic Mutation Calling Challenge

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On this page:

• Overview
• Access ICGC-TCGA DREAM Somatic Mutation Calling Challenge resources on the CGC
• Copy the ICGC-TCGA DREAM Somatic Mutation Calling public project
• Learn more
• Webinar: Visual interface
• Webinar: Python and API
• Resources

Overview

The Seven Bridges CGC is proud to launch the ICGC-TCGA DREAM Somatic Mutation Calling – RNA Challenge (SMC-RNA). The mission of this latest DREAM Challenge is to generate more accurate, reproducible methods for quantifying known isoforms and detecting gene fusions from RNA-Sequencing data.

To help you get started, the CGC has collated challenge resources, including data, example applications, and sample analyses, within a public project on the CGC.

To preserve the integrity of the public projects' resources, you only have read permissions for these projects. You can make a copy of the entire project to conduct further analyses.

Access ICGC-TCGA DREAM Somatic Mutation Calling Challenge resources on the CGC

To access the project:

1. Select Public projects from the top navigation bar on the CGC, as shown below.

2. Choose ICGC-TCGA DREAM Somatic Mutation Calling Challenge - RNA from the dropdown menu.

You can either browse through the project and its resources or make a copy of the project to perform further analyses.

Copy the ICGC-TCGA DREAM Somatic Mutation Calling public project

To copy the entire project:

1. Select Public projects from the top navigation bar.
2. Choose ICGC-TCGA DREAM Somatic Mutation Calling Challenge - RNA from the dropdown menu.
3. Place your mouse cursor over the project title. Project information box is displayed.
4. In the bottom-right part of the project information box, click Copy project.
5. In the pop-up window, you can name your copy of the project, select a billing group and modify execution settings if needed.
6. Once you've customized the details, click Copy to copy the entire project.
   You'll be redirected to the dashboard of your cloned project, as shown below.

You can now use the data and workflows contained within this project to conduct your own analyses.

Learn more

Find out more about the DREAM Challenge on the Cancer Genomics Cloud. Or, view the webinars and resources below.

Resources

Additional webinar resources are located at on the Seven Bridges Github repository. Here, you can find notebooks to help you get started as well as a library of helper function.