{"_id":"56429a87f49bfa0d002f54e0","user":"554290cd6592e60d00027d17","githubsync":"","parentDoc":null,"version":{"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","__v":40,"createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77","59a555bccdbd85001bfb1442","5a2a81f688574d001e9934f5","5b080c8d7833b20003ddbb6f"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"__v":8,"category":{"_id":"55faf96917b9d00d00969f48","pages":["5626a5d644c87f0d00fe6396","5626a5e4e2ce610d004e3dd8","5626a89ce2ce610d004e3dde","56429a87f49bfa0d002f54e0"],"project":"55faf11ba62ba1170021a9a7","__v":4,"version":"55faf11ba62ba1170021a9aa","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2015-09-17T17:33:29.016Z","from_sync":false,"order":20,"slug":"run-an-analysis","title":"RUN AN ANALYSIS"},"project":"55faf11ba62ba1170021a9a7","updates":[],"next":{"pages":[],"description":""},"createdAt":"2015-11-11T01:31:51.986Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":1,"body":"##Overview\n\nLearn how to run a task on the CGC.\n\n##Procedure\n\n1. [Create a draft task](doc:run-a-task#section-1-create-draft-task).\n2. [Optionally designate your task as a Batch task](doc:run-a-task#section--2-optional-designate-your-task-as-a-batch-task).\n3. [Select your input files](doc:run-a-task#section-3-select-input-files).\n4. [Define any custom app settings](doc:run-a-task#section-4-define-app-settings).\n5. [Run the analysis](doc:run-a-task#section-5-run-the-analysis).\n\n##[ 1 ] Create draft task\n\nWhile you configure your task, it is in a draft state and is labelled as a **DRAFT** task. Follow the steps below to create a draft task.\n\n1. Find the app you would like to use in your analysis\n2. Click **Run**. \n\nThis creates your draft task.\n\n##[ 2 ] (Optional) Designate your task as a Batch task\n\nClick the toggle next to **Batching** to switch between Single and Batch tasks. Learn more about [types of tasks](doc:about-analyses#section-about-tasks).\n\nIf you toggle back to a single task at any point, your batch settings will be preserved. Simply turn on batching once more to return to your settings.\n\n##[ 3 ] Select input files\n\nNote that Input files must have already been added to your project.\n\n1. Click **Select files** next to the desired type of input data.\n2. In the file picker, tick the checkbox next to the desired file.\n3. Click **Select**.\n\nThis selects your input file(s) for the task you are configuring. Note that some apps may [suggest reference files](doc:about-analyses#section-suggested-files).\n\nIf you are setting up a [batch task](doc:about-batch-analyses), be sure to select the **Batch by** input criteria for all inputs. If a criteria is grayed out, it is not available. Note that you can use custom metadata fields as well as the CGC metadata fields as criteria for batching.\n\n##[ 4 ] Define app settings\n\n1. Click **Edit Parameters**.\n2. Specify your desired app settings.\n3. Click **Save**.\n\n##[ 5 ] Run the analysis\n\nClick **Run** in the bottom right hand corner to initiate the execution.","excerpt":"","slug":"run-a-task","type":"basic","title":"Run a task"}
##Overview Learn how to run a task on the CGC. ##Procedure 1. [Create a draft task](doc:run-a-task#section-1-create-draft-task). 2. [Optionally designate your task as a Batch task](doc:run-a-task#section--2-optional-designate-your-task-as-a-batch-task). 3. [Select your input files](doc:run-a-task#section-3-select-input-files). 4. [Define any custom app settings](doc:run-a-task#section-4-define-app-settings). 5. [Run the analysis](doc:run-a-task#section-5-run-the-analysis). ##[ 1 ] Create draft task While you configure your task, it is in a draft state and is labelled as a **DRAFT** task. Follow the steps below to create a draft task. 1. Find the app you would like to use in your analysis 2. Click **Run**. This creates your draft task. ##[ 2 ] (Optional) Designate your task as a Batch task Click the toggle next to **Batching** to switch between Single and Batch tasks. Learn more about [types of tasks](doc:about-analyses#section-about-tasks). If you toggle back to a single task at any point, your batch settings will be preserved. Simply turn on batching once more to return to your settings. ##[ 3 ] Select input files Note that Input files must have already been added to your project. 1. Click **Select files** next to the desired type of input data. 2. In the file picker, tick the checkbox next to the desired file. 3. Click **Select**. This selects your input file(s) for the task you are configuring. Note that some apps may [suggest reference files](doc:about-analyses#section-suggested-files). If you are setting up a [batch task](doc:about-batch-analyses), be sure to select the **Batch by** input criteria for all inputs. If a criteria is grayed out, it is not available. Note that you can use custom metadata fields as well as the CGC metadata fields as criteria for batching. ##[ 4 ] Define app settings 1. Click **Edit Parameters**. 2. Specify your desired app settings. 3. Click **Save**. ##[ 5 ] Run the analysis Click **Run** in the bottom right hand corner to initiate the execution.