GET STARTED

• Before you start
• Account settings
• Cloud infrastructure pricing
• View More…

TUTORIALS

• Quickstart - TCGA data (controlled access required)
• Quickstart (open data)
• Comprehensive user guide
• View More…

GUIDES

• Collaborating on the CGC: A Guide for Consortia
• Using CGC for Workshops and Courses

ACCESS THE CGC

• Sign up for the CGC
• Access via the visual interface
• Access via the API
• View More…

MANAGE AN ANALYSIS ENVIRONMENT

• Projects on the CGC
• Create a project
• View a project
• View More…

MANAGE FILES

• Overview
• File repositories on the CGC
• Copy files using the visual interface
• View More…

BRING DATA TO THE CGC

• Upload your data to the CGC
• Upload from your computer
• Upload via the command line
• View More…

COLLABORATE SECURELY

• Collaboration on the CGC
• Add a collaborator to a project
• Set permissions

DATASETS HUB

• ABOUT DATASETS
• About data access
• TCGA data
• View More…

PUBLIC PROJECTS

• Public projects overview
• Smart Variant Filtering
• Cancer Cell Line Encyclopedia (CCLE)
• View More…

SET METADATA ASSOCIATED WITH A PRIVATE FILE

• Metadata for your private data
• System metadata
• Metadata schema
• View More…

FIND APPS

• Apps on the CGC
• Workflows and tools
• Interactive Web Apps

BRING YOUR TOOLS

• About the SDK
• About the Common Workflow Language
• CWL v1.0 improvements over sbg:draft-2
• View More…

TOOL WRAPPING TIPS AND TRICKS

• Make files available in your tool's working directory
• Set the default value for an input port
• JavaScript Cookbook
• View More…

DOCKER

• About Docker
• Install Docker
• The CGC Image Registry
• View More…

DESCRIBE YOUR TOOL (LEGACY)

• The Tool Editor
• General Tool Information
• Tool Input Ports
• View More…

EDIT AN APP (LEGACY)

• Copy public apps to a project
• Copy an app from a project
• Edit a tool
• View More…

ARCHIVE APPS

• App archiving overview
• Archive an app
• Restore an app

RUN AN ANALYSIS

• About analyses
• Run a task
• Define app settings
• View More…

TASK EXECUTION

• About task execution
• About controlling task execution
• About parallelizing tool executions
• View More…

REVIEW A TASK

• Review the task page
• View Task stats
• View Task logs
• View More…

VIEW ANALYSIS RESULTS

• View output files

INTERACTIVE ANALYSIS

• Interactive analysis on the CGC
• Seven Bridges Genome Browser
• Variant Browser
• View More…

DOWNLOAD RESULTS

• Download results

DEVELOPER TOOLS

• Developer Hub
• Get your authentication token
• Publish your app in the Public Apps gallery

CONNECT CLOUD STORAGE

• Connect cloud storage overview
• About Volumes
• About aliases
• View More…

API Hub

• API Overview
• API Quickstart
• Using volumes via the API
• View More…

API CLIENTS

• Store credentials to access Seven Bridges client applications and libraries
• R library
• Client libraries
• View More…

SB Command Line Interface

• Seven Bridges Command Line Interface
• General commands
• Billing
• View More…

EDIT AN APP

• About the editor
• The tool editor
• The workflow editor

ASYNC BULK ACTIONS

• Overview
• Copy multiple files
• Delete multiple files and folders
• View More…

WES API

• Overview
• Run a workflow
• Cancel a running workflow
• View More…

DATA STUDIO

• About Data Studio
• JupyterLab quick reference
• RStudio quick reference
• View More…

SBFS (Beta)

• About SBFS
• Install SBFS manually
• Install SBFS automatically
• View More…

SBFS Command Reference

• Overview
• Configure
• List
• View More…