{"__v":3,"_id":"576bbbe02f4daf0e00a63163","category":{"project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","_id":"576bc92afb62dd20001cda85","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-06-23T11:34:02.608Z","from_sync":false,"order":21,"slug":"interactive-analysis","title":"INTERACTIVE ANALYSIS"},"parentDoc":null,"project":"55faf11ba62ba1170021a9a7","user":"566590c83889610d0008a253","version":{"__v":37,"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-23T10:37:20.990Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":2,"body":"CummeRbundQC gives a way of assessing the quality of differential expression analysis performed with Cuffdiff. It takes a cuffdiff.zip folder as input and produces a report that can be viewed on the Seven Bridges Platform or downloaded to your local drive. The report is also rendered in a page that can be viewed directly from outside the Platform in any internet browser. Files that can be visualized with CummeRbundQC have the special extension cuffdiffcummerbund_report.b64html.\n\nClick any file with the extension **cuffdiffcummerbund_report.b64html** to access the CummeRbundQC report.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/xIeklOuRQ82hUVoO7IHA_cummeRbund%20report.png\",\n        \"cummeRbund report.png\",\n        \"1403\",\n        \"621\",\n        \"#ce943f\",\n        \"\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\nThe left sidebar shows the contents of the CummeRbundQC report. To fully understand the report and plots, we recommend that you read the <a href=\"http://www.bioconductor.org/packages/release/bioc/html/cummeRbund.html\" target=\"blank\">tutorial for this package</a>.\n\n<div align=\"right\"><a href=\"#top\">top</a></div>","excerpt":"<a name=\"top\"></a>","slug":"cummerbundqc","type":"basic","title":"CummeRbundQC RNA-Seq Visualization"}

CummeRbundQC RNA-Seq Visualization

<a name="top"></a>

CummeRbundQC gives a way of assessing the quality of differential expression analysis performed with Cuffdiff. It takes a cuffdiff.zip folder as input and produces a report that can be viewed on the Seven Bridges Platform or downloaded to your local drive. The report is also rendered in a page that can be viewed directly from outside the Platform in any internet browser. Files that can be visualized with CummeRbundQC have the special extension cuffdiffcummerbund_report.b64html. Click any file with the extension **cuffdiffcummerbund_report.b64html** to access the CummeRbundQC report. [block:image] { "images": [ { "image": [ "https://files.readme.io/xIeklOuRQ82hUVoO7IHA_cummeRbund%20report.png", "cummeRbund report.png", "1403", "621", "#ce943f", "" ], "border": true } ] } [/block] The left sidebar shows the contents of the CummeRbundQC report. To fully understand the report and plots, we recommend that you read the <a href="http://www.bioconductor.org/packages/release/bioc/html/cummeRbund.html" target="blank">tutorial for this package</a>. <div align="right"><a href="#top">top</a></div>