{"__v":6,"_id":"567329a858c4890d00bb5461","category":{"__v":3,"_id":"5671979d60c8e70d006c9760","pages":["567199111b6b730d008b4828","567329a858c4890d00bb5461","56d4a1908001e30b00896f54"],"project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2015-12-16T16:55:57.779Z","from_sync":false,"order":10,"slug":"add-files-to-a-project","title":"ADD FILES TO A PROJECT"},"parentDoc":null,"project":"55faf11ba62ba1170021a9a7","user":"5613e4f8fdd08f2b00437620","version":{"__v":37,"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055","58ef66d88646742f009a0216","58f5d52d7891630f00fe4e77"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2015-12-17T21:31:20.265Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":0,"body":"The CGC has [three file repositories](doc:file-repositories-on-the-cgc) including TCGA data and public reference files. To run an analysis on a file, the file must be copied to a project.\n\n##Accessing the file picker in a project\n\nTo access the file picker from a project:\n\n1. [Navigate to the project](doc:view-a-project).\n2. Click on the **Files** tab.\n3. Select **+Add Files**.\n4. Select the correct repository from the navigation panel, as shown below.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/d81755b-add-files-to-project.jpg\",\n        \"add-files-to-project.jpg\",\n        1159,\n        777,\n        \"#f5f4f5\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\n##Searching for a file\n\nOnce you have accessed your desired file repository, you can search for specific files using the search bar.\n\nYou can also filter the repository by file type. As shown in the example below, filtering for FASTA files in the **Public reference files** repository produces several different results.\n\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/8af80b2-search-for-files.jpg\",\n        \"search-for-files.jpg\",\n        1078,\n        649,\n        \"#f0f0f1\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\n##Copy files to a project\n\nTo add files to a project:\n1. Select the checkbox next to your desired file(s), as shown below.\n2. Click **Copy to Project**. \n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/d49af05-copying-files-to-a-project.jpg\",\n        \"copying-files-to-a-project.jpg\",\n        980,\n        590,\n        \"#f2f4f5\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\n3. Click **Ok** to confirm copying the file to your project.","excerpt":"","slug":"copy-files-to-a-project","type":"basic","title":"Copy files using the visual interface"}

Copy files using the visual interface


The CGC has [three file repositories](doc:file-repositories-on-the-cgc) including TCGA data and public reference files. To run an analysis on a file, the file must be copied to a project. ##Accessing the file picker in a project To access the file picker from a project: 1. [Navigate to the project](doc:view-a-project). 2. Click on the **Files** tab. 3. Select **+Add Files**. 4. Select the correct repository from the navigation panel, as shown below. [block:image] { "images": [ { "image": [ "https://files.readme.io/d81755b-add-files-to-project.jpg", "add-files-to-project.jpg", 1159, 777, "#f5f4f5" ], "border": true } ] } [/block] ##Searching for a file Once you have accessed your desired file repository, you can search for specific files using the search bar. You can also filter the repository by file type. As shown in the example below, filtering for FASTA files in the **Public reference files** repository produces several different results. [block:image] { "images": [ { "image": [ "https://files.readme.io/8af80b2-search-for-files.jpg", "search-for-files.jpg", 1078, 649, "#f0f0f1" ], "border": true } ] } [/block] ##Copy files to a project To add files to a project: 1. Select the checkbox next to your desired file(s), as shown below. 2. Click **Copy to Project**. [block:image] { "images": [ { "image": [ "https://files.readme.io/d49af05-copying-files-to-a-project.jpg", "copying-files-to-a-project.jpg", 980, 590, "#f2f4f5" ], "border": true } ] } [/block] 3. Click **Ok** to confirm copying the file to your project.