{"__v":3,"_id":"576bb9de2f4daf0e00a63159","category":{"project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","_id":"576bc92afb62dd20001cda85","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-06-23T11:34:02.608Z","from_sync":false,"order":21,"slug":"interactive-analysis","title":"INTERACTIVE ANALYSIS"},"parentDoc":null,"project":"55faf11ba62ba1170021a9a7","user":"566590c83889610d0008a253","version":{"__v":35,"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-23T10:28:46.382Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":0,"body":"The CGC features static and interactive visualization toolkits to help you interpret the results of analyses on the Platform and to assess the quality of the data obtained.\n\nThe [Seven Bridges Genome Browser](doc:seven-bridges-genome-browser) is our in-house genome browser for exploring alignment files. You can access the Browser from the **Interactive Analysis** tab in your project, as shown below.\n[block:image]\n{\n  \"images\": [\n    {\n      \"image\": [\n        \"https://files.readme.io/QXqGqzeSyaagbwM9f9uw_cgc-interactive-analysis.jpg\",\n        \"cgc-interactive-analysis.jpg\",\n        \"1178\",\n        \"767\",\n        \"#255081\",\n        \"\"\n      ],\n      \"border\": true\n    }\n  ]\n}\n[/block]\nWe also have a comprehensive set of graphics to represent RNAseq results in our visualization suite. Given RNAseq results analyzed with Cuffdiff, [CummeRbundQC RNA-Seq Visualization](doc:cummerbundqc) shows the quality control of the analysis.\n\nTo check the reliability of your raw data, we provide a range of tools to produce quality control reports, such as [FastQC](fastqc) and [Picard Alignment Summary metrics](doc:alignment-summary-metrics).\n\nLastly, the [The Seven Bridges Coverage app](doc:the-seven-bridges-coverage-app) calculates the depth of exon coverage, given in a BED file with reads defined in a BAM file.\n\n<div align=\"right\"><a href=\"#top\">top</a></div>","excerpt":"<a name=\"top\"></a>","slug":"interactive-analysis-on-the-cgc","type":"basic","title":"Interactive analysis on the CGC"}

Interactive analysis on the CGC

<a name="top"></a>

The CGC features static and interactive visualization toolkits to help you interpret the results of analyses on the Platform and to assess the quality of the data obtained. The [Seven Bridges Genome Browser](doc:seven-bridges-genome-browser) is our in-house genome browser for exploring alignment files. You can access the Browser from the **Interactive Analysis** tab in your project, as shown below. [block:image] { "images": [ { "image": [ "https://files.readme.io/QXqGqzeSyaagbwM9f9uw_cgc-interactive-analysis.jpg", "cgc-interactive-analysis.jpg", "1178", "767", "#255081", "" ], "border": true } ] } [/block] We also have a comprehensive set of graphics to represent RNAseq results in our visualization suite. Given RNAseq results analyzed with Cuffdiff, [CummeRbundQC RNA-Seq Visualization](doc:cummerbundqc) shows the quality control of the analysis. To check the reliability of your raw data, we provide a range of tools to produce quality control reports, such as [FastQC](fastqc) and [Picard Alignment Summary metrics](doc:alignment-summary-metrics). Lastly, the [The Seven Bridges Coverage app](doc:the-seven-bridges-coverage-app) calculates the depth of exon coverage, given in a BED file with reads defined in a BAM file. <div align="right"><a href="#top">top</a></div>