{"__v":6,"_id":"56fbb8b828bdc52000cff788","category":{"project":"55faf11ba62ba1170021a9a7","version":"55faf11ba62ba1170021a9aa","_id":"56fbb83d8f21c817002af880","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-03-30T11:27:57.862Z","from_sync":false,"order":1,"slug":"tutorials","title":"TUTORIALS"},"parentDoc":null,"project":"55faf11ba62ba1170021a9a7","user":"554340dfb7f4540d00fcef1d","version":{"__v":35,"_id":"55faf11ba62ba1170021a9aa","project":"55faf11ba62ba1170021a9a7","createdAt":"2015-09-17T16:58:03.490Z","releaseDate":"2015-09-17T16:58:03.490Z","categories":["55faf11ca62ba1170021a9ab","55faf8f4d0e22017005b8272","55faf91aa62ba1170021a9b5","55faf929a8a7770d00c2c0bd","55faf932a8a7770d00c2c0bf","55faf94b17b9d00d00969f47","55faf958d0e22017005b8274","55faf95fa8a7770d00c2c0c0","55faf96917b9d00d00969f48","55faf970a8a7770d00c2c0c1","55faf98c825d5f19001fa3a6","55faf99aa62ba1170021a9b8","55faf99fa62ba1170021a9b9","55faf9aa17b9d00d00969f49","55faf9b6a8a7770d00c2c0c3","55faf9bda62ba1170021a9ba","5604570090ee490d00440551","5637e8b2fbe1c50d008cb078","5649bb624fa1460d00780add","5671974d1b6b730d008b4823","5671979d60c8e70d006c9760","568e8eef70ca1f0d0035808e","56d0a2081ecc471500f1795e","56d4a0adde40c70b00823ea3","56d96b03dd90610b00270849","56fbb83d8f21c817002af880","573c811bee2b3b2200422be1","576bc92afb62dd20001cda85","5771811e27a5c20e00030dcd","5785191af3a10c0e009b75b0","57bdf84d5d48411900cd8dc0","57ff5c5dc135231700aed806","5804caf792398f0f00e77521","58458b4fba4f1c0f009692bb","586d3c287c6b5b2300c05055"],"is_deprecated":false,"is_hidden":false,"is_beta":true,"is_stable":true,"codename":"","version_clean":"1.0.0","version":"1.0"},"updates":["56fd1bb3da27bb2400316358"],"next":{"pages":[],"description":""},"createdAt":"2016-03-30T11:30:00.432Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":0,"body":"The best way to see how the CGC can help your research is to try it out.\n\nUse our tutorials to take a tour!\n\n##The visual interface\n###The CGC Quickstart\nStart with the [QuickStart](doc:quickstart). This will walk you through a simple exome sequencing analysis using the CGC's visual interface in your browser.\n\nWe recommend that you start with the Quickstart to gain familiarity with the basic concepts of the CGC. In particular, you'll create a project, and populate it with some TCGA files and publicly available apps provided on the CGC. Then, you'll modify the files' metadata and the workflow's parameter settings, before running a task.\n\n##Rabix\nRabix is a toolkit that allows you to install and run custom software on the Platform. Follow the [worked example of uploading SamTools Sort](doc:install-and-run-samtools-sort) to see how to Dockerize an app, upload it to the CGC, and use it in a workflow.\n\n##The API\n###API Quickstart\nThe API allows you to automate all procedures on the CGC. The API Quickstart parallels the steps of the Quickstart for the visual interface, but carries them out via the API. It comes with an ipython notebook to allow you to interactively run the code yourself.\n\n###API Recipes\nTo get started building on the CGC API, take a look at the [API recipes](doc:recipes).","excerpt":"","slug":"cgc-tutorials","type":"basic","title":"CGC tutorials"}
The best way to see how the CGC can help your research is to try it out. Use our tutorials to take a tour! ##The visual interface ###The CGC Quickstart Start with the [QuickStart](doc:quickstart). This will walk you through a simple exome sequencing analysis using the CGC's visual interface in your browser. We recommend that you start with the Quickstart to gain familiarity with the basic concepts of the CGC. In particular, you'll create a project, and populate it with some TCGA files and publicly available apps provided on the CGC. Then, you'll modify the files' metadata and the workflow's parameter settings, before running a task. ##Rabix Rabix is a toolkit that allows you to install and run custom software on the Platform. Follow the [worked example of uploading SamTools Sort](doc:install-and-run-samtools-sort) to see how to Dockerize an app, upload it to the CGC, and use it in a workflow. ##The API ###API Quickstart The API allows you to automate all procedures on the CGC. The API Quickstart parallels the steps of the Quickstart for the visual interface, but carries them out via the API. It comes with an ipython notebook to allow you to interactively run the code yourself. ###API Recipes To get started building on the CGC API, take a look at the [API recipes](doc:recipes).