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Guides API Datasets Hub Release Notes

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v1.0

Guides API Datasets Hub Release Notes CGC

API Reference

v1.0Home Guides API Reference

API Reference

List all API pathsget
User
Get my informationget
Users
List user resourcesget
Get controlled study IDs
Billing
List billing API pathsget
List billing groupsget
Get a single billing groupget
Get analysis breakdown for a billing group
Get storage breakdown for a billing group
Get egress breakdown for a billing group
List invoicesget
Get a specific invoiceget
Projects
List all your projectsget
Create a new projectpost
List projects owned by a particular userget
Delete a projectdel
Get details of a projectget
Edit a projectpatch
List members of a projectget
Add a member to a projectpost
Remove a project memberdel
Get a project member's permissionsget
Modify a project member's permissionspatch
Overwrite a project member's permissionsput
Files, folders and metadata
List files (primary method)get
List files (secondary method)get
Delete a filedel
Get file detailsget
Update file detailspatch
Add tags to a fileput
Copy a file between projectspost
Copy multiple files between projectspost
Get download information and URL for a fileget
Get a file's metadataget
Modify a file's metadatapatch
Overwrite a file's metadataput
Create a folderpost
List folder contentsget
Copy a file between folderspost
Move a file between folderspost
Delete a folderdel
Delete a filedel
Upload files
List current multipart uploadsget
Get details of a multipart uploadget
Initialize a multipart uploadpost
Get upload URL for a file partget
Report an uploaded partpost
Report uploaded partspost
Complete a multipart uploadpost
Abort a multipart uploaddel
Apps
List all apps available to youget
Get details of an appget
Copy an apppost
Get raw CWL for an appget
Add an app using raw CWLpost
Get raw CWL for an app revisionget
Get details of an app revisionget
Add an app revision using raw CWLpost
Synchronize a copied app with its parent apppost
Tasks
List tasks you can access (primary method)get
Create a new draft taskpost
Delete a taskdel
Get task inputsget
Abort a taskpost
Get details of a taskget
Modify a taskpatch
Get task execution detailsget
Run a taskpost
Modify task inputspatch
List tasks in a project (secondary method)get
Volumes
Create a volumepost
List volumesget
Get details of a volumeget
List the contents of a volumeget
Get details of a file within a volumeget
Update a volumepatch
Deactivate a volumepatch
Delete a volumedel
Start an import jobpost
Get details of an import jobget
List import jobsget
Start an export jobpost
List export jobsget
Get details of an export jobget
List members of a volumeget
Add members to a volumepost
Remove members from a volumedel
Get a volume member's permissionsget
Overwrite a volume members' permissionsput
Modify a volume members' permissionspatch
Actions
Get file IDspost
Get a file's download URLpost
Rate Limit
Get your current rate limit statusget
API status codes
Post a feedback itempost
Rerun a taskpost

DATASETS API

Example query 1: Find samples connected to a casepost
Example query 2: Count samples connected to a casepost
Example query 3: Find cases with given age at diagnosispost
Example query 4: Find all cases with a given age at diagnosis and a particular diseasepost
Example query 5: Complex example for filtering TCGA datapost
Example query 6: Find TCGA cases with or without a prior diagnosis and related samples from a particular tissue source site and return the sample type code for each of these samplespost

BULK API ACTIONS

Bulk features overview
Start a bulk import jobpost
Get details of a bulk import jobpost
Start a bulk export jobpost
Get details of a bulk export jobpost
Bulk deletion of filespost
Get details of multiple filespost
Update details of multiple filespost
Edit details of multiple filespost
Get details of multiple taskspost

DRS API

Overview
Get info about a DRS objectget
Get a URL for downloading a fileget
Download a DRS object (file) tutorial
Start a bulk DRS import jobpost
Get details of a bulk DRS import jobget

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API Reference

User

This call returns info on your CGC account:

Get my information

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Updated less than a minute ago

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