Dockerized tool cannot start

Posted in Add your tools by Anjan Purkayastha Tue Jun 21 2016 20:41:33 GMT+0000 (UTC)·1·Viewed 491 times

Hello I have dockerized Picard in the following image: In brief, I use a perl script runPicard to run the "AddOrReplaceReadGroups" and "MarkDuplicates" sequentially, on a sorted bam file, within a single container. The image runs as expected on my local machine. However I get an error: "Failed to start runpicard. Internal error: Docker container failed to start. " on CGC. Any ideas on what may be going wrong? Thanks.
Gaurav Kaushik
June 22, 2016

Hi, Anjan. I responded to a similar question in another post. Please refer to and post any updates in that thread:

And thanks again for posting on the Forum! :)

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