Dockerized tool cannot start

Posted in Add your tools by Anjan Purkayastha Tue Jun 21 2016 20:41:33 GMT+0000 (Coordinated Universal Time)·1·Viewed 522 times

Hello I have dockerized Picard in the following image: cgc-images.sbgenomics.com/purkayasthaa/runpicard-2.3.0. In brief, I use a perl script runPicard to run the "AddOrReplaceReadGroups" and "MarkDuplicates" sequentially, on a sorted bam file, within a single container. The image runs as expected on my local machine. However I get an error: "Failed to start runpicard. Internal error: Docker container failed to start. " on CGC. Any ideas on what may be going wrong? Thanks.
Gaurav Kaushik
June 22, 2016

Hi, Anjan. I responded to a similar question in another post. Please refer to and post any updates in that thread: http://docs.cancergenomicscloud.org/v1.0/discuss/576a18226f15260e001f8893

And thanks again for posting on the Forum! :)

  
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