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Dockerized tool cannot start
almost 8 years ago by Anjan Purkayastha
Hello I have dockerized Picard in the following image: cgc-images.sbgenomics.com/purkayasthaa/runpicard-2.3.0.
In brief, I use a perl script runPicard to run the "AddOrReplaceReadGroups" and "MarkDuplicates" sequentially, on a sorted bam file, within a single container. The image runs as expected on my local machine. However I get an error: "Failed to start runpicard. Internal error: Docker container failed to start. " on CGC. Any ideas on what may be going wrong? Thanks.