# The CGC Knowledge Center Documentation > Documentation for the Seven Bridges Cancer Genomics Cloud (CGC) which supports researchers working with The Cancer Genome Atlas data. Append .md to any documentation page URL to get its markdown version. ## Guides - [Before you start](https://docs.cancergenomicscloud.org/docs/before-you-start.md) - [Account settings](https://docs.cancergenomicscloud.org/docs/account-settings.md): - [Cloud infrastructure pricing](https://docs.cancergenomicscloud.org/docs/about-pricing.md) - [Developer dashboard](https://docs.cancergenomicscloud.org/docs/developer-dashboard.md) - [About the Payments page](https://docs.cancergenomicscloud.org/docs/payments.md) - [Email notifications page](https://docs.cancergenomicscloud.org/docs/manage-global-email-notifications.md): - [Quickstart - TCGA data (controlled access required)](https://docs.cancergenomicscloud.org/docs/quickstart.md): To introduce you to the major features of the CGC, this QuickStart will walk through a simple somatic calling analysis using Vardict Somatic Calling. - [Worked example of uploading SamTools Sort](https://docs.cancergenomicscloud.org/docs/install-and-run-samtools-sort.md) - [Upload a custom python program using a Dockerfile](https://docs.cancergenomicscloud.org/docs/worked-example-of-uploading-a-custom-python-program.md) - [Maintaining and versioning CWL on external tool repositories](https://docs.cancergenomicscloud.org/docs/maintaining-and-versioning-cwl-on-external-tool-repositories.md) - [Estimate and manage your cloud costs](https://docs.cancergenomicscloud.org/docs/estimate-and-manage-your-cloud-costs.md) - [Troubleshooting tutorial](https://docs.cancergenomicscloud.org/docs/troubleshooting-tutorial-1.md) - [Collaborating on the CGC: A Guide for Consortia](https://docs.cancergenomicscloud.org/docs/collaborating-on-the-cgc-a-guide-for-consortia.md) - [Using CGC for Workshops and Courses](https://docs.cancergenomicscloud.org/docs/using-cgc-for-workshops-and-courses.md) - [Secure Configuration Guide](https://docs.cancergenomicscloud.org/docs/secure-configuration-guide.md): How to securely configure and use your account, projects, and data on the Cancer Genomics Cloud. - [Sign up for the CGC](https://docs.cancergenomicscloud.org/docs/sign-up-for-the-cgc.md) - [Access via the visual interface](https://docs.cancergenomicscloud.org/docs/access-via-the-visual-interface.md) - [Access via the API](https://docs.cancergenomicscloud.org/docs/accessing-via-the-api.md) - [Credits](https://docs.cancergenomicscloud.org/docs/credits.md) - [Projects on the CGC](https://docs.cancergenomicscloud.org/docs/projects-on-the-cgc.md) - [Create a project](https://docs.cancergenomicscloud.org/docs/create-a-project.md) - [View a project](https://docs.cancergenomicscloud.org/docs/view-a-project.md) - [Manage the project dashboard](https://docs.cancergenomicscloud.org/docs/manage-the-project-dashboard.md) - [Modify project settings](https://docs.cancergenomicscloud.org/docs/modify-project-settings.md) - [Restrict file downloads](https://docs.cancergenomicscloud.org/docs/define-download-restriction.md) - [Add notes to your project](https://docs.cancergenomicscloud.org/docs/add-notes-to-your-project.md): - [Delete a project](https://docs.cancergenomicscloud.org/docs/delete-project.md) - [Leave a project](https://docs.cancergenomicscloud.org/docs/leave-a-project.md) - [Manage email notifications](https://docs.cancergenomicscloud.org/docs/manage-email-notifications.md) - [Overview](https://docs.cancergenomicscloud.org/docs/manage-files-overview.md) - [File repositories on the CGC](https://docs.cancergenomicscloud.org/docs/file-repositories-on-the-cgc.md) - [Copy files using the visual interface](https://docs.cancergenomicscloud.org/docs/copy-files-to-a-project.md) - [Copy files using the API](https://docs.cancergenomicscloud.org/docs/copy-files-using-the-api.md) - [Search files on the CGC](https://docs.cancergenomicscloud.org/docs/search-files-on-the-cgc.md) - [Tag your files](https://docs.cancergenomicscloud.org/docs/tag-your-files.md) - [Activity center](https://docs.cancergenomicscloud.org/docs/activity-center.md) - [File archiving overview](https://docs.cancergenomicscloud.org/docs/file-archiving-overview.md) - [Archive a file](https://docs.cancergenomicscloud.org/docs/archive-a-file.md) - [Restore a file](https://docs.cancergenomicscloud.org/docs/restore-a-file.md) - [Delete an archived file](https://docs.cancergenomicscloud.org/docs/delete-an-archived-file.md) - [Import individual files (Copy DRS URI)](https://docs.cancergenomicscloud.org/docs/copy-the-file-drs-uri.md) - [New File Browser](https://docs.cancergenomicscloud.org/docs/new-file-browser.md) - [Upload your data to the CGC](https://docs.cancergenomicscloud.org/docs/upload-to-the-cgc.md) - [Upload from your computer](https://docs.cancergenomicscloud.org/docs/upload-from-your-computer.md) - [Upload via the command line](https://docs.cancergenomicscloud.org/docs/upload-via-the-command-line.md) - [Import from an FTP or HTTP(S) server](https://docs.cancergenomicscloud.org/docs/upload-from-an-ftp-server.md): - [Upload via the API](https://docs.cancergenomicscloud.org/docs/upload-via-the-api.md) - [Import from a Volume](https://docs.cancergenomicscloud.org/docs/upload-from-a-volume.md) - [Import data from the PDC](https://docs.cancergenomicscloud.org/docs/import-from-the-pdc.md) - [Import data from ICDC](https://docs.cancergenomicscloud.org/docs/import-from-icdc.md) - [Import data from the GC](https://docs.cancergenomicscloud.org/docs/import-data-from-the-gc.md) - [Import from a DRS server](https://docs.cancergenomicscloud.org/docs/import-from-a-drs-server.md) - [Import data from the GDC](https://docs.cancergenomicscloud.org/docs/import-from-the-gdc.md) - [Import data from the CTDC](https://docs.cancergenomicscloud.org/docs/import-data-from-the-ctdc.md) - [Import data from Gen3 AnVIL to CGC](https://docs.cancergenomicscloud.org/docs/import-data-from-gen3-anvil-to-cgc.md) - [Dynamic PFB Importer](https://docs.cancergenomicscloud.org/docs/dynamic-pfb-importer.md) - [Collaboration on the CGC](https://docs.cancergenomicscloud.org/docs/collaboration-on-the-cgc.md) - [Add a collaborator to a project](https://docs.cancergenomicscloud.org/docs/add-a-collaborator-to-a-project.md): [Watch and learn from the video guide](http://docs.cancergenomicscloud.org/docs/add-a-collaborator-to-a-project#section-add-a-collaborator-video) - [Set permissions](https://docs.cancergenomicscloud.org/docs/set-permissions.md) - [ABOUT DATASETS](https://docs.cancergenomicscloud.org/docs/about-datasets.md) - [About data access](https://docs.cancergenomicscloud.org/docs/dbgap-controlled-data-access.md) - [TCGA data](https://docs.cancergenomicscloud.org/docs/tcga-data.md): ABOUT DATASETS > TCGA data - [TCGA GRCh38 data](https://docs.cancergenomicscloud.org/docs/tcga-grch38-data.md): ABOUT DATASETS > TCGA GRCh38 data - [CCLE data](https://docs.cancergenomicscloud.org/docs/ccle-data.md): ABOUT DATASETS > CCLE data - [Foundation Medicine data](https://docs.cancergenomicscloud.org/docs/fm-data.md) - [SGDP data](https://docs.cancergenomicscloud.org/docs/sgdp-data.md) - [TCIA data](https://docs.cancergenomicscloud.org/docs/tcia-data.md) - [CPTAC data](https://docs.cancergenomicscloud.org/docs/cptac-data.md) - [TARGET GRCh38 data](https://docs.cancergenomicscloud.org/docs/target-data.md): ABOUT DATASETS > TARGET data - [ICGC data](https://docs.cancergenomicscloud.org/docs/icgc-data.md) - [PGP-UK data](https://docs.cancergenomicscloud.org/docs/pgp-uk-data.md) - [ABOUT METADATA FOR DATASETS](https://docs.cancergenomicscloud.org/docs/about-metadata-for-datasets.md) - [TCGA metadata](https://docs.cancergenomicscloud.org/docs/tcga-metadata.md): ABOUT METADATA FOR DATASETS > TCGA metadata - [TCGA GRCh38 metadata](https://docs.cancergenomicscloud.org/docs/tcga-grch38-metadata.md): ABOUT METADATA FOR DATASETS > TCGA GRCh38 metadata - [CCLE metadata](https://docs.cancergenomicscloud.org/docs/ccle-metadata.md): ABOUT METADATA FOR DATASETS > CCLE metadata - [CPTAC metadata](https://docs.cancergenomicscloud.org/docs/cptac-metadata.md): ABOUT METADATA FOR DATASETS > CPTAC metadata - [CPTAC-3 metadata](https://docs.cancergenomicscloud.org/docs/cptac-3-metadata.md) - [TCIA Metadata](https://docs.cancergenomicscloud.org/docs/tcia-metadata.md) - [TARGET GRCh38 metadata](https://docs.cancergenomicscloud.org/docs/target-metadata.md): ABOUT METADATA FOR DATASETS > TARGET metadata - [ICGC metadata](https://docs.cancergenomicscloud.org/docs/icgc-metadata.md) - [PGP-UK metadata](https://docs.cancergenomicscloud.org/docs/pgp-uk-metadata.md) - [BROWSE DATASETS](https://docs.cancergenomicscloud.org/docs/browse-datasets.md) - [About the Data Overview](https://docs.cancergenomicscloud.org/docs/about-the-data-overview.md): BROWSE DATASETS > About the Data Overview - [↳ Data Overview features](https://docs.cancergenomicscloud.org/docs/data-overview-features.md): BROWSE DATASETS > About the Data Overview > Data Overview features - [↳ Use the Data Overview](https://docs.cancergenomicscloud.org/docs/use-the-data-overview.md): BROWSE DATASETS > About the Data Overview > Use the Data Overview - [About the Case Explorer](https://docs.cancergenomicscloud.org/docs/about-the-case-explorer.md): BROWSE DATASETS > About the Case Explorer - [↳ Case Explorer features](https://docs.cancergenomicscloud.org/docs/case-explorer-features.md): BROWSE DATASETS > About the Case Explorer > Case Explorer features - [↳ Use the Case Explorer](https://docs.cancergenomicscloud.org/docs/use-the-case-explorer.md): BROWSE DATASETS > About the Case Explorer > Use the Case Explorer - [QUERY DATASETS](https://docs.cancergenomicscloud.org/docs/query-datasets.md) - [About the Data Browser](https://docs.cancergenomicscloud.org/docs/about-the-data-browser.md): QUERY DATASETS > About the Data Browser - [↳ Data Browser features](https://docs.cancergenomicscloud.org/docs/data-browser-features.md): QUERY DATASETS >About the Data Browser > Data Browser features - [↳ Data model versions](https://docs.cancergenomicscloud.org/docs/data-model-versions.md) - [↳ Data Browser query structure](https://docs.cancergenomicscloud.org/docs/data-browser-query-structure.md): QUERY DATASETS >About the Data Browser > Data Browser feature query structure - [↳ Data Browser query: start from an example query](https://docs.cancergenomicscloud.org/docs/data-browser-query-start-from-an-example-query.md): QUERY DATASETS >About the Data Browser > Data Browser query: start from an example query - [↳ Data Browser query: start by searching through a dataset](https://docs.cancergenomicscloud.org/docs/data-browser-query-start-by-searching-through-a-dataset.md): QUERY DATASETS >About the Data Browser > Data Browser query: start by searching through a dataset - [↳ Data Browser query: start from scratch](https://docs.cancergenomicscloud.org/docs/data-browser-query-start-from-scratch.md): QUERY DATASETS > About the Data Browser > Data Browser query: start from scratch - [↳ Data Browser query: start from an existing query](https://docs.cancergenomicscloud.org/docs/data-browser-query-start-from-an-existing-query.md): QUERY DATASETS >About the Data Browser > Data Browser query: start from an existing query - [↳ Data Browser query: multiple dataset query](https://docs.cancergenomicscloud.org/docs/data-browser-query-multiple-dataset-query.md): QUERY DATASETS >About the Data Browser > Data Browser query: multiple dataset query - [↳ Data Browser query: start by searching for an ID](https://docs.cancergenomicscloud.org/docs/data-browser-query-start-by-searching-for-an-id.md): QUERY DATASETS >About the Data Browser > Data Browser query: multiple dataset query - [About the Datasets API](https://docs.cancergenomicscloud.org/docs/about-the-datasets-api.md): QUERY DATASETS > About the Datasets API - [↳ Browse datasets via the Datasets API](https://docs.cancergenomicscloud.org/docs/browse-datasets-via-the-datasets-api.md): QUERY DATASETS > About the Datasets API > Browse datasets via the Datasets API - [↳ Query via the Datasets API](https://docs.cancergenomicscloud.org/docs/query-via-the-datasets-api.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API - [↳Search via the Datasets API](https://docs.cancergenomicscloud.org/docs/search-via-the-datasets-api.md): QUERY DATASETS > About the Datasets API > Search via the Datasets API - [ACCESS DATA FROM DATASETS](https://docs.cancergenomicscloud.org/docs/access-data-from-datasets.md) - [Access data from the Data Browser](https://docs.cancergenomicscloud.org/docs/access-data-from-the-data-browser.md): ACCESS DATA FROM DATASETS > Access data from the Data Browser - [Access data from the Datasets API](https://docs.cancergenomicscloud.org/docs/access-data-from-the-datasets-api.md): ACCESS DATA FROM DATASETS > Access data from the Datasets API - [Dataset ontologies](https://docs.cancergenomicscloud.org/docs/dataset-ontologies.md) - [Manifest files for datasets](https://docs.cancergenomicscloud.org/docs/manifest-files-for-datasets.md) - [Public projects overview](https://docs.cancergenomicscloud.org/docs/public-projects.md) - [Smart Variant Filtering](https://docs.cancergenomicscloud.org/docs/smart-variant-filtering.md) - [Cancer Cell Line Encyclopedia (CCLE)](https://docs.cancergenomicscloud.org/docs/ccle.md): - [ICGC-TCGA DREAM Somatic Mutation Calling Challenge](https://docs.cancergenomicscloud.org/docs/dream-challenge.md) - [Simons Genome Diversity Project (SGDP) dataset](https://docs.cancergenomicscloud.org/docs/simons-genome-diversity-project-sgdp-dataset.md) - [The Cancer Imaging Archive (TCIA) project](https://docs.cancergenomicscloud.org/docs/the-cancer-imaging-archive-tcia-project.md) - [The Clinical Proteomic Tumor Analysis Consortium (CPTAC) project](https://docs.cancergenomicscloud.org/docs/the-clinical-proteomic-tumor-analysis-consortium-cptac-project.md) - [Personal Genome Project UK (PGP-UK) pilot dataset](https://docs.cancergenomicscloud.org/docs/personal-genome-project-uk-pgp-uk-pilot-dataset.md) - [Human Cell Atlas Preview Datasets](https://docs.cancergenomicscloud.org/docs/human-cell-atlas-preview-datasets.md) - [Data Studio Interactive Analyses](https://docs.cancergenomicscloud.org/docs/data-cruncher-interactive-analyses.md) - [Bulk RNA-Seq Transcription Profiling of HSV-1 Infected Cells](https://docs.cancergenomicscloud.org/docs/bulk-rna-seq-transcription-profiling-of-hsv-1-infected-cells-1.md) - [Cancer Data Aggregator (CDA) with CGC: Usage Guide](https://docs.cancergenomicscloud.org/docs/cancer-data-aggregator-cda-with-cgc-usage-guide.md) - [MCMICRO - End to End Microscopy Image Processing](https://docs.cancergenomicscloud.org/docs/mcmicro.md) - [Metadata for your private data](https://docs.cancergenomicscloud.org/docs/metadata-for-private-data.md): - [System metadata](https://docs.cancergenomicscloud.org/docs/system-metadata.md) - [Metadata schema](https://docs.cancergenomicscloud.org/docs/metadata-schema.md) - [Edit metadata using the visual interface](https://docs.cancergenomicscloud.org/docs/edit-metadata-using-the-visual-interface.md) - [Edit metadata with a manifest](https://docs.cancergenomicscloud.org/docs/edit-metadata-with-a-manifest.md) - [Export metadata to a manifest](https://docs.cancergenomicscloud.org/docs/export-metadata-to-a-manifest.md) - [Edit metadata using the command line uploader](https://docs.cancergenomicscloud.org/docs/set-metadata-using-the-command-line-uploader.md) - [Edit metadata using the API](https://docs.cancergenomicscloud.org/docs/set-metadata-using-the-api.md) - [Metadata manifest file format](https://docs.cancergenomicscloud.org/docs/format-of-a-manifest-file.md) - [Generate DRS manifest](https://docs.cancergenomicscloud.org/docs/generate-drs-manifest.md) - [Apps on the CGC](https://docs.cancergenomicscloud.org/docs/apps-on-the-cgc.md): - [Workflows and tools](https://docs.cancergenomicscloud.org/docs/workflows-and-tools.md) - [Search for an app (workflow or tool)](https://docs.cancergenomicscloud.org/docs/search-for-an-app.md) - [Explore app details](https://docs.cancergenomicscloud.org/docs/explore-app-details.md) - [App versions](https://docs.cancergenomicscloud.org/docs/app-versions.md) - [Interactive Web Apps](https://docs.cancergenomicscloud.org/docs/interactive-web-apps.md) - [About the SDK](https://docs.cancergenomicscloud.org/docs/sdk-overview.md) - [About the Common Workflow Language](https://docs.cancergenomicscloud.org/docs/about-the-common-workflow-language.md) - [CWL v1.0 improvements over sbg:draft-2](https://docs.cancergenomicscloud.org/docs/cwl-v10-improvements-over-sbgdraft-2.md) - [CWL v1.2 conditional execution](https://docs.cancergenomicscloud.org/docs/cwl-v12-conditional-execution.md) - [Bring Nextflow apps to the CGC](https://docs.cancergenomicscloud.org/docs/bring-nextflow-apps-to-the-cgc.md) - [Bring WDL apps to the CGC](https://docs.cancergenomicscloud.org/docs/bring-wdl-apps-to-the-cgc.md) - [Bring your Shiny apps to the CGC](https://docs.cancergenomicscloud.org/docs/bring-your-shiny-apps.md) - [Developing Shiny applications for publishing](https://docs.cancergenomicscloud.org/docs/developing-shiny-applications-for-publishing.md) - [Local development](https://docs.cancergenomicscloud.org/docs/local-development.md) - [App registration](https://docs.cancergenomicscloud.org/docs/app-registration.md) - [sbShinyModules Package Usage Guidelines](https://docs.cancergenomicscloud.org/docs/sbshinymodules-package-usage-guidelines.md) - [Installation](https://docs.cancergenomicscloud.org/docs/sb-shinymodules-installation.md) - [Key modules](https://docs.cancergenomicscloud.org/docs/key-modules.md) - [File picker module](https://docs.cancergenomicscloud.org/docs/file-picker-module.md) - [Plot exporter module](https://docs.cancergenomicscloud.org/docs/plot-exporter-module.md) - [Generic file exporter module](https://docs.cancergenomicscloud.org/docs/generic-file-exporter-module.md) - [Additional features available in the package](https://docs.cancergenomicscloud.org/docs/additional-features-available-in-the-package.md) - [Make files available in your tool's working directory](https://docs.cancergenomicscloud.org/docs/make-files-available-in-your-tools-working-directory.md) - [Set the default value for an input port](https://docs.cancergenomicscloud.org/docs/set-the-default-value-for-an-input-port.md) - [JavaScript Cookbook](https://docs.cancergenomicscloud.org/docs/javascript-cookbook.md) - [Set suggested input values for CWL v1.x apps](https://docs.cancergenomicscloud.org/docs/set-suggested-input-values-for-cwl-v1x-apps.md) - [About Docker](https://docs.cancergenomicscloud.org/docs/docker-basics.md) - [Install Docker](https://docs.cancergenomicscloud.org/docs/install-docker.md) - [The CGC Image Registry](https://docs.cancergenomicscloud.org/docs/the-cgc-image-registry.md): Store images containing tools - [Create and upload a Docker image](https://docs.cancergenomicscloud.org/docs/upload-your-docker-image.md): - [Create and upload a Docker image with a Dockerfile](https://docs.cancergenomicscloud.org/docs/upload-your-docker-image-with-a-dockerfile.md) - [Manage Docker repositories](https://docs.cancergenomicscloud.org/docs/manage-docker-repositories.md) - [Core Docker commands](https://docs.cancergenomicscloud.org/docs/core-docker-commands.md) - [Mount a USB drive in a Docker container](https://docs.cancergenomicscloud.org/docs/mount-a-usb-drive-in-a-docker-container.md) - [The Tool Editor](https://docs.cancergenomicscloud.org/docs/the-tool-editor.md) - [General Tool Information](https://docs.cancergenomicscloud.org/docs/general-tool-information.md): Details of the fields on the General tab of the Tool Editor - [Tool Input Ports](https://docs.cancergenomicscloud.org/docs/tool-input-ports.md): - [Tool Output Ports](https://docs.cancergenomicscloud.org/docs/tool-output-ports.md): This page contains information on how to use the fields of the Outputs tab on the Tool Editor. - [Additional Tool Information](https://docs.cancergenomicscloud.org/docs/additional-tool-information.md) - [Test the Tool Description](https://docs.cancergenomicscloud.org/docs/test-the-tool-description.md) - [Dynamic Expressions in Tool Descriptions](https://docs.cancergenomicscloud.org/docs/dynamic-expressions-in-tool-descriptions.md): Create arguments that vary depending on features of the job, inputs, or outputs - [Advanced features of the tool editor](https://docs.cancergenomicscloud.org/docs/advanced-features-of-the-tool-editor.md): - [Fork a tool](https://docs.cancergenomicscloud.org/docs/forking-tools.md) - [Copy public apps to a project](https://docs.cancergenomicscloud.org/docs/copy-public-apps-to-a-project.md) - [Copy an app from a project](https://docs.cancergenomicscloud.org/docs/copy-an-app-from-a-project.md) - [Edit a tool](https://docs.cancergenomicscloud.org/docs/edit-a-tool.md) - [Create a workflow](https://docs.cancergenomicscloud.org/docs/create-a-workflow.md): - [Edit a workflow](https://docs.cancergenomicscloud.org/docs/the-pipeline-editor.md): - [Revision notes](https://docs.cancergenomicscloud.org/docs/revision-notes.md) - [App archiving overview](https://docs.cancergenomicscloud.org/docs/app-archiving-overview.md) - [Archive an app](https://docs.cancergenomicscloud.org/docs/archive-an-app.md) - [Restore an app](https://docs.cancergenomicscloud.org/docs/restore-an-app.md) - [About analyses](https://docs.cancergenomicscloud.org/docs/about-analyses.md) - [Run a task](https://docs.cancergenomicscloud.org/docs/run-a-task.md) - [Define app settings](https://docs.cancergenomicscloud.org/docs/define-app-settings.md) - [Set computation instances](https://docs.cancergenomicscloud.org/docs/set-computation-instances.md): - [Import Dockstore apps to the CGC](https://docs.cancergenomicscloud.org/docs/run-dockstore-apps-on-the-cgc.md) - [About batch analyses](https://docs.cancergenomicscloud.org/docs/about-batch-analyses.md) - [About secondary (index) files](https://docs.cancergenomicscloud.org/docs/about-secondary-index-files.md) - [About task execution](https://docs.cancergenomicscloud.org/docs/about-task-execution.md) - [About controlling task execution](https://docs.cancergenomicscloud.org/docs/about-controlling-task-execution.md) - [About parallelizing tool executions](https://docs.cancergenomicscloud.org/docs/about-parallelizing-tool-executions.md) - [About tool resource requirements](https://docs.cancergenomicscloud.org/docs/about-tool-resource-requirements.md) - [About Memoization (Reuse)](https://docs.cancergenomicscloud.org/docs/about-memoization.md) - [Project and file locations (Multi-cloud)](https://docs.cancergenomicscloud.org/docs/project-and-file-locations.md) - [Set execution hints at workflow level](https://docs.cancergenomicscloud.org/docs/set-execution-hints-at-workflow-level.md) - [Set execution hints at node level](https://docs.cancergenomicscloud.org/docs/set-execution-hints-at-node-level.md) - [Set execution hints at tool level](https://docs.cancergenomicscloud.org/docs/set-execution-hints-at-tool-level.md) - [Set execution hints at task level](https://docs.cancergenomicscloud.org/docs/set-execution-hints-at-task-level.md) - [About Spot/Preemptible Instances](https://docs.cancergenomicscloud.org/docs/about-spot-instances.md) - [Use Spot/Preemptible Instances](https://docs.cancergenomicscloud.org/docs/use-spot-instances.md) - [List of execution hints](https://docs.cancergenomicscloud.org/docs/list-of-execution-hints.md) - [List of task statuses](https://docs.cancergenomicscloud.org/docs/list-of-task-statuses.md) - [List of available Amazon Web Services US East instances](https://docs.cancergenomicscloud.org/docs/list-of-available-amazon-web-services-instances.md) - [List of available Google Cloud Platform instances](https://docs.cancergenomicscloud.org/docs/list-of-available-google-cloud-platform-instances.md) - [Estimate task costs (Cost estimator)](https://docs.cancergenomicscloud.org/docs/estimate-task-costs.md) - [Review the task page](https://docs.cancergenomicscloud.org/docs/review-task-page.md) - [View Task stats](https://docs.cancergenomicscloud.org/docs/view-task-stats.md): - [View Task logs](https://docs.cancergenomicscloud.org/docs/view-task-logs.md): - [Job retry](https://docs.cancergenomicscloud.org/docs/job-retry.md): - [View instance metrics](https://docs.cancergenomicscloud.org/docs/view-instance-metrics.md) - [Real-time job monitoring](https://docs.cancergenomicscloud.org/docs/real-time-job-monitoring.md) - [Troubleshoot a failed task](https://docs.cancergenomicscloud.org/docs/troubleshoot-a-failed-task.md): - [View output files](https://docs.cancergenomicscloud.org/docs/view-output-files.md): - [Interactive analysis on the CGC](https://docs.cancergenomicscloud.org/docs/interactive-analysis-on-the-cgc.md): - [Seven Bridges Genome Browser](https://docs.cancergenomicscloud.org/docs/seven-bridges-genome-browser.md): - [Variant Browser](https://docs.cancergenomicscloud.org/docs/variant-browser.md): - [CummeRbundQC RNA-Seq Visualization](https://docs.cancergenomicscloud.org/docs/cummerbundqc.md): - [FastQC](https://docs.cancergenomicscloud.org/docs/fastqc.md): - [Picard Alignment Summary metrics](https://docs.cancergenomicscloud.org/docs/alignment-summary-metrics.md): - [The Seven Bridges Coverage app](https://docs.cancergenomicscloud.org/docs/the-seven-bridges-coverage-app.md): - [dbGaP Submission Form Suite](https://docs.cancergenomicscloud.org/docs/dbgap-submission-form-suite.md) - [Download results](https://docs.cancergenomicscloud.org/docs/download-results.md) - [Developer Hub](https://docs.cancergenomicscloud.org/docs/developer-hub.md) - [Get your authentication token](https://docs.cancergenomicscloud.org/docs/get-your-authentication-token.md) - [Publish your app in the Public Apps gallery](https://docs.cancergenomicscloud.org/docs/publish-your-app.md) - [Connect cloud storage overview](https://docs.cancergenomicscloud.org/docs/connect-cloud-storage-overview.md) - [About Volumes](https://docs.cancergenomicscloud.org/docs/volumes.md) - [About aliases](https://docs.cancergenomicscloud.org/docs/aliases.md) - [Access Volumes](https://docs.cancergenomicscloud.org/docs/about-volumes-on-the-visual-interface.md) - [Supported cloud storage providers](https://docs.cancergenomicscloud.org/docs/supported-cloud-storage-providers.md) - [Amazon Web Services Simple Storage Service (AWS S3) Volumes](https://docs.cancergenomicscloud.org/docs/amazon-web-services-simple-storage-service-aws-s3-volumes.md) - [Attach an Amazon Web Services (AWS) volume](https://docs.cancergenomicscloud.org/docs/attach-an-amazon-web-services-aws-volume.md) - [AWS Cloud storage tutorial](https://docs.cancergenomicscloud.org/docs/aws-cloud-storage-tutorial.md) - [Google Cloud Storage (GCS) Volumes](https://docs.cancergenomicscloud.org/docs/google-cloud-storage-gcs-volumes.md) - [Attach a Google Cloud Storage volume](https://docs.cancergenomicscloud.org/docs/attach-a-google-cloud-storage-volume.md) - [Google Cloud Storage tutorial](https://docs.cancergenomicscloud.org/docs/google-cloud-storage-tutorial.md) - [Microsoft Azure Volumes](https://docs.cancergenomicscloud.org/docs/microsoft-azure-volumes.md) - [Attach a Microsoft Azure volume](https://docs.cancergenomicscloud.org/docs/attach-a-microsoft-azure-volume.md) - [Enabling cross-origin resource sharing (CORS)](https://docs.cancergenomicscloud.org/docs/enabling-cross-origin-resource-sharing-cors.md) - [Security concerns when working with volumes](https://docs.cancergenomicscloud.org/docs/security-concerns-when-working-with-volumes.md) - [Manage members for a volume](https://docs.cancergenomicscloud.org/docs/manage-members-for-a-volume.md) - [Browse and add files to a project from a volume](https://docs.cancergenomicscloud.org/docs/browse-and-add-files-to-a-project-from-a-volume.md) - [Deactivate a volume](https://docs.cancergenomicscloud.org/docs/deactivate-a-volume.md) - [API Overview](https://docs.cancergenomicscloud.org/docs/the-cgc-api.md) - [API Quickstart](https://docs.cancergenomicscloud.org/docs/api-quickstart.md): - [Using volumes via the API](https://docs.cancergenomicscloud.org/docs/using-volumes-via-the-api.md) - [API Batch tutorial](https://docs.cancergenomicscloud.org/docs/api-batch-tutorial.md) - [API rate limit](https://docs.cancergenomicscloud.org/docs/api-rate-limit.md) - [Store credentials to access Seven Bridges client applications and libraries](https://docs.cancergenomicscloud.org/docs/store-credentials-to-access-seven-bridges-client-applications-and-libraries.md) - [R library](https://docs.cancergenomicscloud.org/docs/api-r-library.md) - [Client libraries](https://docs.cancergenomicscloud.org/docs/api-language-bindings.md) - [Python Library](https://docs.cancergenomicscloud.org/docs/api-python-library.md) - [Java library](https://docs.cancergenomicscloud.org/docs/api-java-library.md) - [Recipes](https://docs.cancergenomicscloud.org/docs/recipes.md) - [Java library Quickstart](https://docs.cancergenomicscloud.org/docs/java-library-quickstart.md) - [Seven Bridges Command Line Interface](https://docs.cancergenomicscloud.org/docs/command-line-interface.md) - [General commands](https://docs.cancergenomicscloud.org/docs/general-commands-1.md) - [Billing](https://docs.cancergenomicscloud.org/docs/billing-2.md) - [Projects and members](https://docs.cancergenomicscloud.org/docs/projects-and-members.md) - [Files and metadata](https://docs.cancergenomicscloud.org/docs/files-and-metadata.md) - [Upload and download files](https://docs.cancergenomicscloud.org/docs/upload-and-download-files.md) - [Apps](https://docs.cancergenomicscloud.org/docs/apps-1.md) - [Tasks](https://docs.cancergenomicscloud.org/docs/tasks-1.md) - [Volumes](https://docs.cancergenomicscloud.org/docs/volumes-1.md) - [About the editor](https://docs.cancergenomicscloud.org/docs/about-the-editor.md) - [The tool editor](https://docs.cancergenomicscloud.org/docs/the-tool-editor-1.md) - [About the tool editor](https://docs.cancergenomicscloud.org/docs/about-the-tool-editor.md) - [Introduction to tool wrapping](https://docs.cancergenomicscloud.org/docs/introduction-to-tool-wrapping.md) - [Create a tool](https://docs.cancergenomicscloud.org/docs/create-a-tool.md) - [Tool editor tutorial](https://docs.cancergenomicscloud.org/docs/tool-editor-tutorial.md) - [Input file options](https://docs.cancergenomicscloud.org/docs/input-file-options.md) - [Advanced practices](https://docs.cancergenomicscloud.org/docs/advanced-practices.md) - [Dynamic expressions in tool descriptions](https://docs.cancergenomicscloud.org/docs/dynamic-expressions-in-tool-descriptions-1.md) - [Javascript Cookbook](https://docs.cancergenomicscloud.org/docs/javascript-cookbook-1.md) - [The workflow editor](https://docs.cancergenomicscloud.org/docs/the-workflow-editor.md) - [About the workflow editor](https://docs.cancergenomicscloud.org/docs/about-the-workflow-editor.md) - [Create a workflow](https://docs.cancergenomicscloud.org/docs/create-a-workflow-1.md) - [Workflow editor tutorial](https://docs.cancergenomicscloud.org/docs/workflow-editor-tutorial.md) - [Overview](https://docs.cancergenomicscloud.org/docs/async-bulk-operations-overview.md) - [Copy multiple files](https://docs.cancergenomicscloud.org/docs/copy-multiple-files.md): v2/async/file/copy - [Delete multiple files and folders](https://docs.cancergenomicscloud.org/docs/delete-multiple-files-and-folders.md): v2/async/files/delete - [Get details of a copy job](https://docs.cancergenomicscloud.org/docs/get-details-of-a-copy-job.md): v2/async/files/copy/{jobid} - [Get details of a deletion job](https://docs.cancergenomicscloud.org/docs/get-details-of-a-deletion-job.md): v2/async/files/delete/{jobid} - [Get details of all async jobs](https://docs.cancergenomicscloud.org/docs/get-details-of-all-async-jobs.md): v2/async/files - [Move multiple files or folders](https://docs.cancergenomicscloud.org/docs/move-multiple-files-or-folders.md) - [Get details of a move job](https://docs.cancergenomicscloud.org/docs/get-details-of-a-move-job.md) - [Overview](https://docs.cancergenomicscloud.org/docs/wes-api-overview.md) - [Run a workflow](https://docs.cancergenomicscloud.org/docs/run-a-workflow.md) - [Cancel a running workflow](https://docs.cancergenomicscloud.org/docs/cancel-a-running-workflow.md) - [Get the status of the workflow run](https://docs.cancergenomicscloud.org/docs/get-the-status-of-the-workflow-run.md) - [Get details of a workflow run](https://docs.cancergenomicscloud.org/docs/get-details-of-a-workflow-run.md) - [List workflow runs](https://docs.cancergenomicscloud.org/docs/list-workflow-runs.md) - [Get service information](https://docs.cancergenomicscloud.org/docs/get-service-information.md) - [About Data Studio](https://docs.cancergenomicscloud.org/docs/about-data-cruncher.md) - [JupyterLab quick reference](https://docs.cancergenomicscloud.org/docs/editor-quick-reference.md) - [RStudio quick reference](https://docs.cancergenomicscloud.org/docs/rstudio-quick-reference.md) - [SAS Studio quick reference](https://docs.cancergenomicscloud.org/docs/sas-studio-quick-reference.md) - [Galaxy quick reference](https://docs.cancergenomicscloud.org/docs/galaxy-quick-reference.md) - [OHIF Viewer quick reference](https://docs.cancergenomicscloud.org/docs/ohif-viewer-quick-reference.md) - [Run a Data Studio analysis](https://docs.cancergenomicscloud.org/docs/run-an-analysis-using-data-cruncher.md) - [Data Studio analysis details](https://docs.cancergenomicscloud.org/docs/view-and-edit-data-cruncher-analysis-details.md) - [Copy a Data Studio analysis](https://docs.cancergenomicscloud.org/docs/copy-a-data-cruncher-analysis.md) - [Data Studio analysis charging](https://docs.cancergenomicscloud.org/docs/data-cruncher-analysis-charging.md) - [Data Studio environments and libraries](https://docs.cancergenomicscloud.org/docs/about-libraries-in-a-data-cruncher-analysis.md) - [Data Studio analysis editor](https://docs.cancergenomicscloud.org/docs/about-files-in-a-data-cruncher-analysis.md) - [Data Studio Session Activity and Automatic Logout](https://docs.cancergenomicscloud.org/docs/data-studio-session-activity-and-automatic-logout.md) - [About SBFS](https://docs.cancergenomicscloud.org/docs/about-sbfs.md) - [Install SBFS manually](https://docs.cancergenomicscloud.org/docs/install-sbfs-manually.md) - [Install SBFS automatically](https://docs.cancergenomicscloud.org/docs/install-sbfs-automatically.md) - [Configure SBFS credentials](https://docs.cancergenomicscloud.org/docs/configure-sbfs-credentials.md) - [List available projects for SBFS](https://docs.cancergenomicscloud.org/docs/list-available-projects-for-sbfs.md) - [Mount a project](https://docs.cancergenomicscloud.org/docs/mount-a-project.md) - [Unmount a project](https://docs.cancergenomicscloud.org/docs/unmount-a-project.md) - [SBFS Log](https://docs.cancergenomicscloud.org/docs/sbfs-log.md) - [Upgrade SBFS](https://docs.cancergenomicscloud.org/docs/upgrade-sbfs.md) - [Uninstall SBFS](https://docs.cancergenomicscloud.org/docs/uninstall-sbfs.md) - [Overview](https://docs.cancergenomicscloud.org/docs/command-reference-overview.md) - [Configure](https://docs.cancergenomicscloud.org/docs/configure.md) - [List](https://docs.cancergenomicscloud.org/docs/list.md) - [Mount](https://docs.cancergenomicscloud.org/docs/mount.md) - [Actions after mounting](https://docs.cancergenomicscloud.org/docs/actions-after-mounting.md) - [Unmount](https://docs.cancergenomicscloud.org/docs/unmount.md) - [General commands](https://docs.cancergenomicscloud.org/docs/general-commands.md) ## API Reference - [List all API paths](https://docs.cancergenomicscloud.org/reference/new-1.md): / - [User](https://docs.cancergenomicscloud.org/reference/user.md) - [Get my information](https://docs.cancergenomicscloud.org/reference/get-my-information.md): /user - [Users](https://docs.cancergenomicscloud.org/reference/users.md) - [List user resources](https://docs.cancergenomicscloud.org/reference/list-user-resources.md): /users/{username} - [Get controlled study IDs](https://docs.cancergenomicscloud.org/reference/get-controlled-study-ids.md): /v2/third-party-provider/dcf/access - [Billing](https://docs.cancergenomicscloud.org/reference/billing.md) - [List billing API paths](https://docs.cancergenomicscloud.org/reference/list-billing-sub-urls.md): /billing - [List billing groups](https://docs.cancergenomicscloud.org/reference/list-your-billing-groups.md): /billing/groups - [Get a single billing group](https://docs.cancergenomicscloud.org/reference/get-a-single-billing-group.md): /billing/groups/{billing_group} - [Get analysis breakdown for a billing group](https://docs.cancergenomicscloud.org/reference/get-analysis-breakdown-for-a-billing-group.md) - [Get storage breakdown for a billing group](https://docs.cancergenomicscloud.org/reference/get-storage-breakdown-for-a-billing-group.md) - [Get egress breakdown for a billing group](https://docs.cancergenomicscloud.org/reference/get-egress-breakdown-for-a-billing-group.md) - [List invoices](https://docs.cancergenomicscloud.org/reference/list-invoices.md): /billing/invoices - [Get a specific invoice](https://docs.cancergenomicscloud.org/reference/get-a-specific-invoice.md): /billing/invoices/{invoice_id} - [Projects](https://docs.cancergenomicscloud.org/reference/projects.md) - [List all your projects](https://docs.cancergenomicscloud.org/reference/list-all-your-projects.md): /projects - [Create a new project](https://docs.cancergenomicscloud.org/reference/create-a-new-project.md): /projects - [List projects owned by a particular user](https://docs.cancergenomicscloud.org/reference/list-projects-owned-by-a-particular-user.md): /projects/{owner} - [Delete a project](https://docs.cancergenomicscloud.org/reference/delete-a-project.md): projects/{project_owner}/{project} - [Get details of a project](https://docs.cancergenomicscloud.org/reference/get-project-details.md): /projects/{project_owner}/{project} - [Edit a project](https://docs.cancergenomicscloud.org/reference/edit-a-specified-project.md): projects/{project_owner}/{project} - [List members of a project](https://docs.cancergenomicscloud.org/reference/list-members-of-a-project.md): /projects/{project_owner}/{project}/members - [Add a member to a project](https://docs.cancergenomicscloud.org/reference/add-a-member-to-a-project.md): /projects/{project_owner}/{project}/members - [Remove a project member](https://docs.cancergenomicscloud.org/reference/remove-a-project-member.md): /projects/{project_owner}/{project}/members/{username} - [Get a project member's permissions](https://docs.cancergenomicscloud.org/reference/get-a-project-members-permissions.md): /projects/{project_owner}/{project}/members/{username} - [Modify a project member's permissions](https://docs.cancergenomicscloud.org/reference/modify-a-project-members-permissions.md): projects/{project_owner}/{project}/members/{member}/permissions - [Overwrite a project member's permissions](https://docs.cancergenomicscloud.org/reference/set-a-project-members-privileges.md): /projects/{project_owner}/{project}/members/{username}/permissions - [Files, folders and metadata](https://docs.cancergenomicscloud.org/reference/files.md) - [List files (primary method)](https://docs.cancergenomicscloud.org/reference/list-files-in-a-project.md): /files - [List files (secondary method)](https://docs.cancergenomicscloud.org/reference/list-files-secondary-method.md): projects/{project_owner}/{project_name}/files - [Delete a file](https://docs.cancergenomicscloud.org/reference/delete-a-file.md): /files/{file_id} - [Get file details](https://docs.cancergenomicscloud.org/reference/get-file-details.md): /files/{file_id} - [Update file details](https://docs.cancergenomicscloud.org/reference/update-file-details.md): files/{file_id} - [Add tags to a file](https://docs.cancergenomicscloud.org/reference/add-tags-to-a-file.md): files/{file_id}/tags - [Copy a file between projects](https://docs.cancergenomicscloud.org/reference/copy-a-file.md): /v2/files/{file_id}/actions/copy - [Copy multiple files between projects](https://docs.cancergenomicscloud.org/reference/copy-files-between-projects-1.md): /action/files/copy - [Get download information and URL for a file](https://docs.cancergenomicscloud.org/reference/get-download-url-for-a-file.md): /files/{file_id}/download_info - [Get a file's metadata](https://docs.cancergenomicscloud.org/reference/get-a-files-metadata.md): files/{file_id}/metadata - [Modify a file's metadata](https://docs.cancergenomicscloud.org/reference/modify-a-files-metadata.md): /files/{file_id}/metadata - [Overwrite a file's metadata](https://docs.cancergenomicscloud.org/reference/overwrite-a-files-metadata.md): /files/{file_id}/metadata - [Create a folder](https://docs.cancergenomicscloud.org/reference/create-a-folder.md): /files - [List folder contents](https://docs.cancergenomicscloud.org/reference/list-folder-contents.md): files/{folder_id}/list - [Copy a file between folders](https://docs.cancergenomicscloud.org/reference/copy-a-file-between-folders.md): /files/{file_id}/actions/copy - [Move a file between folders](https://docs.cancergenomicscloud.org/reference/move-a-file-between-folders.md): /files - [Delete a folder](https://docs.cancergenomicscloud.org/reference/delete-a-folder.md): files/{folder_id} - [Delete a file](https://docs.cancergenomicscloud.org/reference/delete-a-file-1.md): files/{file_id} - [Upload files](https://docs.cancergenomicscloud.org/reference/upload-files.md) - [List current multipart uploads](https://docs.cancergenomicscloud.org/reference/list-current-multipart-uploads.md): /upload/multipart - [Get details of a multipart upload](https://docs.cancergenomicscloud.org/reference/get-details-of-a-multipart-upload.md): /upload/multipart/{upload_id} - [Initialize a multipart upload](https://docs.cancergenomicscloud.org/reference/initialize-a-multipart-upload.md): /upload/multipart - [Get upload URL for a file part](https://docs.cancergenomicscloud.org/reference/get-upload-url-for-a-file-part.md): /upload/multipart/{upload_id}/part/{part_number} - [Report an uploaded part](https://docs.cancergenomicscloud.org/reference/report-an-uploaded-part.md): /upload/multipart/{upload_id}/part - [Report uploaded parts](https://docs.cancergenomicscloud.org/reference/report-uploaded-parts.md): /upload/multipart/{upload_id} - [Complete a multipart upload](https://docs.cancergenomicscloud.org/reference/complete-a-multipart-upload.md): /upload/multipart/{upload_id}/complete - [Abort a multipart upload](https://docs.cancergenomicscloud.org/reference/abort-a-multipart-upload.md): /upload/multipart/{upload_id} - [Apps](https://docs.cancergenomicscloud.org/reference/apps.md) - [List all apps available to you](https://docs.cancergenomicscloud.org/reference/list-all-apps-available-to-you.md): /apps - [Get details of an app](https://docs.cancergenomicscloud.org/reference/get-details-of-an-app.md): /apps/{app_id} - [Copy an app](https://docs.cancergenomicscloud.org/reference/copy-an-app-secondary-method.md): /apps/{app_id}/actions/copy - [Get raw CWL for an app](https://docs.cancergenomicscloud.org/reference/get-raw-app-information.md): /apps/{app_id}/raw - [Add an app using raw CWL](https://docs.cancergenomicscloud.org/reference/add-an-app-using-raw-cwl.md): /apps/{app_id}/raw - [Get raw CWL for an app revision](https://docs.cancergenomicscloud.org/reference/get-raw-cwl-for-an-app-revision.md): /apps/{app_id}/{revision_number}/raw - [Get details of an app revision](https://docs.cancergenomicscloud.org/reference/get-a-specific-revision-of-an-app.md): /apps/{app_id}/{revision_number} - [Add an app revision using raw CWL](https://docs.cancergenomicscloud.org/reference/create-an-app-revision-raw.md): /apps/{app_id}/{revision_number}raw - [Synchronize a copied app with its parent app](https://docs.cancergenomicscloud.org/reference/synchronize-a-copied-app-with-its-parent-app.md): /apps/{app_id}/actions/sync - [Tasks](https://docs.cancergenomicscloud.org/reference/tasks.md) - [List tasks you can access (primary method)](https://docs.cancergenomicscloud.org/reference/list-tasks-you-can-access.md): /tasks - [Create a new draft task](https://docs.cancergenomicscloud.org/reference/create-a-new-task.md): /tasks - [Delete a task](https://docs.cancergenomicscloud.org/reference/delete-a-specific-task.md): /tasks/{task_id} - [Get task inputs](https://docs.cancergenomicscloud.org/reference/get-task-inputs.md): /tasks/{task_id}/inputs - [Abort a task](https://docs.cancergenomicscloud.org/reference/abort-a-task.md): /tasks/{task_id}/actions/abort - [Get details of a task](https://docs.cancergenomicscloud.org/reference/get-details-of-a-task.md): /tasks/{task_id} - [Modify a task](https://docs.cancergenomicscloud.org/reference/modify-a-task.md): /tasks/{task_id} - [Get task execution details](https://docs.cancergenomicscloud.org/reference/get-task-execution-details.md): /tasks/{task_id}/execution_details - [Run a task](https://docs.cancergenomicscloud.org/reference/perform-an-action-on-a-specific-task.md): /tasks/{task_id}/actions/run - [Modify task inputs](https://docs.cancergenomicscloud.org/reference/modify-task-inputs.md): /tasks/{task_id}/inputs - [List tasks in a project (secondary method)](https://docs.cancergenomicscloud.org/reference/list-tasks-in-a-project.md): /projects/{project_owner}/{project}/tasks - [Volumes](https://docs.cancergenomicscloud.org/reference/volumes-v2.md) - [Create a volume](https://docs.cancergenomicscloud.org/reference/create-a-volume-v2.md) - [List volumes](https://docs.cancergenomicscloud.org/reference/list-volumes-v2.md) - [Get details of a volume](https://docs.cancergenomicscloud.org/reference/get-details-of-a-volume-v2.md) - [List the contents of a volume](https://docs.cancergenomicscloud.org/reference/list-the-contents-of-a-volume.md) - [Get details of a file within a volume](https://docs.cancergenomicscloud.org/reference/get-details-of-a-file-within-a-volume.md) - [Update a volume](https://docs.cancergenomicscloud.org/reference/update-a-volume-v2.md) - [Deactivate a volume](https://docs.cancergenomicscloud.org/reference/deactivate-a-volume-1.md) - [Delete a volume](https://docs.cancergenomicscloud.org/reference/delete-a-volume-v2.md) - [Start an import job](https://docs.cancergenomicscloud.org/reference/start-an-import-job-v2.md) - [Get details of an import job](https://docs.cancergenomicscloud.org/reference/get-details-of-an-import-job-v2.md) - [List import jobs](https://docs.cancergenomicscloud.org/reference/list-import-jobs-v2.md) - [Start an export job](https://docs.cancergenomicscloud.org/reference/start-an-export-job-v2.md) - [List export jobs](https://docs.cancergenomicscloud.org/reference/list-export-jobs-v2.md) - [Get details of an export job](https://docs.cancergenomicscloud.org/reference/get-details-of-an-export-job-v2.md) - [List members of a volume](https://docs.cancergenomicscloud.org/reference/list-members-of-a-volume.md) - [Add members to a volume](https://docs.cancergenomicscloud.org/reference/add-members-to-a-volume.md) - [Remove members from a volume](https://docs.cancergenomicscloud.org/reference/remove-members-from-a-volume.md) - [Get a volume member's permissions](https://docs.cancergenomicscloud.org/reference/get-a-volume-members-permissions.md) - [Overwrite a volume members' permissions](https://docs.cancergenomicscloud.org/reference/overwrite-a-volume-members-permissions.md) - [Modify a volume members' permissions](https://docs.cancergenomicscloud.org/reference/modify-a-volume-members-permissions.md) - [Actions](https://docs.cancergenomicscloud.org/reference/actions.md) - [Get file IDs](https://docs.cancergenomicscloud.org/reference/get-file-ids.md): /v2/action/files/get_ids - [Get a file's download URL](https://docs.cancergenomicscloud.org/reference/get-a-files-download-url.md): action/files/get_download_url - [Rate Limit](https://docs.cancergenomicscloud.org/reference/rate-limit.md) - [Get your current rate limit status](https://docs.cancergenomicscloud.org/reference/get-your-current-rate-limit-status.md): /rate_limit - [API status codes](https://docs.cancergenomicscloud.org/reference/api-status-codes.md) - [Post a feedback item](https://docs.cancergenomicscloud.org/reference/post-a-feedback-item.md): /action/notifications/feedback - [Rerun a task](https://docs.cancergenomicscloud.org/reference/rerun-a-task.md): /tasks/{task_id}/actions/clone - [Example query 1: Find samples connected to a case](https://docs.cancergenomicscloud.org/reference/example-query-1-find-samples-connected-to-a-case.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API > Example query 1: Find samples... - [Example query 2: Count samples connected to a case](https://docs.cancergenomicscloud.org/reference/example-query-2-count-samples-connected-to-a-case.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API > Example query 2: count samples... - [Example query 3: Find cases with given age at diagnosis](https://docs.cancergenomicscloud.org/reference/example-query-3-find-cases-with-given-age-at-diagnosis.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API > Example query 3: find cases with... - [Example query 4: Find all cases with a given age at diagnosis and a particular disease](https://docs.cancergenomicscloud.org/reference/example-query-4-find-all-cases-with-a-given-age-at-diagnosis-and-a-particular-disease.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API > Example query 4... - [Example query 5: Complex example for filtering TCGA data](https://docs.cancergenomicscloud.org/reference/example-query-5-complex-example-for-filtering-tcga-data.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API > Example query 5: Complex example... - [Example query 6: Find TCGA cases with or without a prior diagnosis and related samples from a particular tissue source site and return the sample type code for each of these samples](https://docs.cancergenomicscloud.org/reference/example-query-6-find-tcga-cases-with-or-without-a-prior-diagnosis-and-related-samples-from-a-particular-tissue-source-site-and-return-the-sample-type-code-for-each-of-these-samples.md): QUERY DATASETS > About the Datasets API > Query via the Datasets API > Example query 6: Find TCGA cases... - [Bulk features overview](https://docs.cancergenomicscloud.org/reference/bulk-features-overview.md) - [Start a bulk import job](https://docs.cancergenomicscloud.org/reference/start-a-bulk-import-job.md) - [Get details of a bulk import job](https://docs.cancergenomicscloud.org/reference/get-details-of-a-bulk-import-job.md) - [Start a bulk export job](https://docs.cancergenomicscloud.org/reference/start-a-bulk-export-job.md) - [Get details of a bulk export job](https://docs.cancergenomicscloud.org/reference/get-details-of-a-bulk-export-job.md) - [Bulk deletion of files](https://docs.cancergenomicscloud.org/reference/bulk-deletion-of-files.md) - [Get details of multiple files](https://docs.cancergenomicscloud.org/reference/get-details-of-multiple-files.md) - [Update details of multiple files](https://docs.cancergenomicscloud.org/reference/update-details-of-multiple-files.md) - [Edit details of multiple files](https://docs.cancergenomicscloud.org/reference/edit-details-of-multiple-files.md) - [Get details of multiple tasks](https://docs.cancergenomicscloud.org/reference/get-statistics-of-multiple-tasks.md) - [Overview](https://docs.cancergenomicscloud.org/reference/drs-api-overview.md) - [Get info about a DRS object](https://docs.cancergenomicscloud.org/reference/get-info-about-a-drs-object.md) - [Get a URL for downloading a file](https://docs.cancergenomicscloud.org/reference/get-an-url-for-downloading-a-file.md) - [Download a DRS object (file) tutorial](https://docs.cancergenomicscloud.org/reference/download-a-file-tutorial.md) - [Start a bulk DRS import job](https://docs.cancergenomicscloud.org/reference/start-a-bulk-drs-import-job.md) - [Get details of a bulk DRS import job](https://docs.cancergenomicscloud.org/reference/get-details-of-a-bulk-drs-import-job.md)