SVS files are unavailable through the APi

Posted in API by Maor Maor Tue Jun 05 2018 09:27:21 GMT+0000 (UTC)·1·Viewed 40 times

SVS files are availble through the website: https://portal.gdc.cancer.gov/cases/9fe336a8-08a7-4fe7-bf45-afd6a8eb9c75 They are also available on the data portal as of May 21 2018: (same page, click on Files, it leads to data portal. You can see svs files for this case) However issue an API call to: https://cgc-datasets-api.sbgenomics.com/datasets/v0/tcga/cases/9FE336A8-08A7-4FE7-BF45-AFD6A8EB9C75/files No svs files are available.
Natasa Bezmarevic
June 6, 2018

Hello Maor,

I am Natasa from Seven Bridges Genomics Support team.

As part of our ongoing relationship with the National Cancer Institute, which provides funding to support researcher access to TCGA data through our platform, and in keeping with our commitment to make the most up-to-date data available to our platform users, we are in the process of updating the TCGA dataset we host on the CGC to align with the latest data release available from the GDC (Data Release 11.0).

The SVS files you asked about were made available via the GDC Portal as part of Data Release 11.0, so these files will be available through the CGC and our API once we complete our update. We expect that to occur later this month and will be notifying all CGC users about this soon.

If you have any additional questions, I am at your disposal.

Best regards,
Natasa

  
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