Get diagnosis data

Posted in TCGA data on the CGC by Xavier Bofill De Ros Mon Nov 06 2017 17:43:41 GMT+0000 (UTC)·1·Viewed 36 times

Hi! I'm trying to download the diagnosis data to see if I can find some correlations with my gene of interest. In the Data browser I can see the Diagnosis Details but despite making subgroups for the data import I can't get those details in the metadata file. Is there any way to extract them? Thanks
Darko Kostadinovic
Nov 9, 2017

Hello Xavier,

I am Darko from Seven Bridges Support team.

If you want to export the Data Browser entries that can be done by selecting Export button on the List view. I have sent to your email address image with example selection and export option preview.

Also every query that you construct in the Data Browser and if you chose to copy files to the Project has no effect on what metadata fields you see in the Projects/File explorer view. Only some of the metadata fields from the Data Browser are available in the Projects/File explorer view.

I hope this clarified things, don't hesitate to ask us if this was not satisfactory to you.

Best,
Darko

  
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